Description

Ensembl ID g06952 Gene ID Accession -
Symbol Alias - Full Name RNApolymerase 14 kDa subunit
Status Confidence Length 1417 bases Strand Minus strand
Position FJVB01000013.1 : 179756 - 181172 RNA binding domain RNA_pol_L_2 , RNA_pol_L
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g06952 RNA_pol_L_2 PF13656 1.7e-23 1
g06952 RNA_pol_L PF01193 4.9e-10 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g06952.t1 516 122aa g06952.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g06952arabidopsis_hallerig28333.t141.379322.4138arabidopsis_hallerig06952.t139.344321.3115

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g06952arabidopsis_hallerig06952.t142.62326.2295chondrus_crispusCDF4049248.148129.6296
g06952arabidopsis_hallerig06952.t145.901631.9672chlamydomonas_reinhardtiiPNW7444055.445538.6139
g06952arabidopsis_hallerig06952.t151.639341.8033papaver_somniferumRZC784296048.5714
g06952arabidopsis_hallerig06952.t151.639341.8033papaver_somniferumRZC8425558.878547.6636
g06952arabidopsis_hallerig06952.t159.016444.2623cannabis_sativa_femalecds.novel_model_5707_5bd9a17a70.588252.9412
g06952arabidopsis_hallerig06952.t156.557439.3443physcomitrium_patensPp3c3_11180V3.456.557439.3443
g06952arabidopsis_hallerig06952.t161.475446.7213ficus_caricaFCD_00002147-RA:cds41.899431.8436
g06952arabidopsis_hallerig06952.t156.557444.2623beta_vulgarisKMT0514865.714351.4286
g06952arabidopsis_hallerig06952.t161.475446.7213citrullus_lanatusCla97C03G051910.173.529455.8824
g06952arabidopsis_hallerig06952.t160.655745.9016citrullus_lanatusCla97C03G053490.171.153853.8462
g06952arabidopsis_hallerig06952.t159.836145.082cucumis_sativusKGN6476470.192352.8846
g06952arabidopsis_hallerig06952.t160.655746.7213cucumis_sativusKGN6577568.518552.7778
g06952arabidopsis_hallerig06952.t162.295153.2787theobroma_cacaoEOY3386266.666757.0175
g06952arabidopsis_hallerig06952.t178.688572.1311arabidopsis_thalianaAT2G29540.369.064863.3094
g06952arabidopsis_hallerig06952.t143.442632.7869cucumis_meloMELO3C020585.2.184.12763.4921
g06952arabidopsis_hallerig06952.t154.91846.7213populus_trichocarpaPotri.001G246600.1.v4.165.686355.8824
g06952arabidopsis_hallerig06952.t160.655753.2787brassica_junceacds.BjuA04g18810S83.146173.0337
g06952arabidopsis_hallerig06952.t190.163977.8689brassica_napusCDY4545185.271373.6434
g06952arabidopsis_hallerig06952.t190.163979.5082brassica_napusCDY5336785.271375.1938
g06952arabidopsis_hallerig06952.t163.934454.918brassica_napusCDY513617867
g06952arabidopsis_hallerig06952.t134.426226.2295malus_domestica_goldenmRNA:MD10G00653005642.6667
g06952arabidopsis_hallerig06952.t154.098436.8852marchantia_polymorphaPTQ3452551.562535.1562
g06952arabidopsis_hallerig06952.t157.37738.5246marchantia_polymorphaPTQ3638353.030335.6061
g06952arabidopsis_hallerig06952.t156.557445.082prunus_dulcisVVA3760264.48651.4019
g06952arabidopsis_hallerig06952.t156.557445.082prunus_persicaONI1685164.48651.4019
g06952arabidopsis_hallerig06952.t146.721334.4262prunus_persicaONI2104561.956545.6522
g06952arabidopsis_hallerig06952.t134.426227.0492cajanus_cajanC.cajan_33389.t58.333345.8333
g06952arabidopsis_hallerig06952.t154.91843.4426cajanus_cajanC.cajan_33381.t63.207550
g06952arabidopsis_hallerig06952.t157.37743.4426cajanus_cajanC.cajan_18890.t65.420649.5327
g06952arabidopsis_hallerig06952.t157.37743.4426glycine_maxKRG9384166.037750
g06952arabidopsis_hallerig06952.t159.016447.541glycine_maxKRH0150153.333342.963
g06952arabidopsis_hallerig06952.t157.37748.3607lupinus_angustifoliusOIW0650661.946952.2124
g06952arabidopsis_hallerig06952.t157.37743.4426medicago_truncatulaAES7783760.869646.087
g06952arabidopsis_hallerig06952.t151.639340.1639phaseolus_vulgarisESW2362264.285750
g06952arabidopsis_hallerig06952.t154.098441.8033phaseolus_vulgarisESW1132168.041252.5773
g06952arabidopsis_hallerig06952.t155.737745.9016pisum_sativumPsat3g190320.1.cds66.019454.3689
g06952arabidopsis_hallerig06952.t153.278742.623vigna_unguiculataVigun04g093100.1.v1.266.326553.0612
g06952arabidopsis_hallerig06952.t153.278742.623vigna_unguiculataVigunL076900.1.v1.266.326553.0612
g06952arabidopsis_hallerig06952.t149.180336.8852vigna_unguiculataVigun04g093233.1.v1.252.173939.1304
g06952arabidopsis_hallerig06952.t153.278743.4426vigna_unguiculataVigun05g021400.1.v1.267.010354.6392
g06952arabidopsis_hallerig06952.t152.45942.623vigna_unguiculataVigun04g093200.2.v1.265.306153.0612
g06952arabidopsis_hallerig06952.t149.180336.8852vigna_unguiculataVigunL059082.1.v1.252.173939.1304
g06952arabidopsis_hallerig06952.t15036.8852vigna_unguiculataVigun04g093300.1.v1.262.244945.9184
g06952arabidopsis_hallerig06952.t15040.9836vigna_angularisKOM5573962.244951.0204
g06952arabidopsis_hallerig06952.t156.557445.9016manihot_esculentaOAY6113565.094352.8302
g06952arabidopsis_hallerig06952.t159.836149.1803capsicum_annuumPHT6467169.523857.1429
g06952arabidopsis_hallerig06952.t159.016450solanum_tuberosumPGSC0003DMT40003473968.571458.0952
g06952arabidopsis_hallerig06952.t159.836150.8197solanum_tuberosumPGSC0003DMT40005368169.523859.0476
g06952arabidopsis_hallerig06952.t159.016447.541solanum_lycopersicumSolyc11g012195.1.168.571455.2381
g06952arabidopsis_hallerig06952.t159.836150.8197solanum_lycopersicumSolyc06g005865.1.169.523859.0476
g06952arabidopsis_hallerig06952.t159.016446.7213sesamum_indicumSIN_1001790.t68.571454.2857
g06952arabidopsis_hallerig06952.t156.557445.9016helianthus_annuusmRNA:HanXRQr2_Chr17g07813816956
g06952arabidopsis_hallerig06952.t156.557445.9016helianthus_annuusmRNA:HanXRQr2_Chr09g03951216956
g06952arabidopsis_hallerig06952.t157.37744.2623lactuca_sativacds-PLY89262.148.611137.5
g06952arabidopsis_hallerig06952.t156.557443.4426lolium_perennecds.KYUSt_chr5.1140563.302848.6239
g06952arabidopsis_hallerig06952.t159.836144.2623avena_sativa_ot3098cds.AVESA.00001b.r3.4Dg0001161.145.911933.9623
g06952arabidopsis_hallerig06952.t142.62332.7869avena_sativa_ot3098cds.AVESA.00001b.r3.7Cg0001543.145.61435.0877
g06952arabidopsis_hallerig06952.t159.836144.2623avena_sativa_sangAVESA.00010b.r2.4DG0737350.2.CDS67.592650
g06952arabidopsis_hallerig06952.t159.836145.082avena_sativa_sangAVESA.00010b.r2.7CG0688290.1.CDS67.592650.9259
g06952arabidopsis_hallerig06952.t154.098439.3443oryza_longistaminataKN538698.1_FGP00335.675725.9459
g06952arabidopsis_hallerig06952.t159.016444.2623oryza_rufipogonORUFI12G06170.145.859934.3949
g06952arabidopsis_hallerig06952.t159.016444.2623oryza_brachyanthaOB12G15170.166.05549.5413
g06952arabidopsis_hallerig06952.t157.37741.8033oryza_punctataOPUNC11G06880.156.451641.129
g06952arabidopsis_hallerig06952.t159.016443.4426oryza_punctataOPUNC12G05290.147.368434.8684
g06952arabidopsis_hallerig06952.t159.016444.2623oryza_glaberrimaORGLA12G0053400.166.666750
g06952arabidopsis_hallerig06952.t158.196745.082secale_cerealeSECCE4Rv1G0227720.165.740750.9259
g06952arabidopsis_hallerig06952.t157.37744.2623setaria_viridisTKW0713965.420650.4673
g06952arabidopsis_hallerig06952.t158.196744.2623setaria_viridisTKW0026066.981150.9434
g06952arabidopsis_hallerig06952.t159.016445.082sorghum_bicolorEES1681441.379331.6092
g06952arabidopsis_hallerig06952.t156.557442.623sorghum_bicolorEES0835264.48648.5981
g06952arabidopsis_hallerig06952.t158.196744.2623setaria_italicaKQK9426342.011831.9527
g06952arabidopsis_hallerig06952.t157.37744.2623setaria_italicaKQK9937965.420650.4673
g06952arabidopsis_hallerig06952.t157.37744.2623triticum_aestivumTraesCS4A02G204400.164.814850
g06952arabidopsis_hallerig06952.t158.196745.082triticum_aestivumTraesCS4D02G105200.137.368428.9474
g06952arabidopsis_hallerig06952.t157.37743.4426zea_maysZm00001eb169140_P00166.037750
g06952arabidopsis_hallerig06952.t156.557441.8033ananas_comosusAco013602.1.mrna157.542.5
g06952arabidopsis_hallerig06952.t136.885221.3115caenorhabditis_elegansF58A4.9.131.2518.0556
g06952arabidopsis_hallerig06952.t136.885218.0328drosophila_melanogasterFBpp030761134.090916.6667
g06952arabidopsis_hallerig06952.t158.196744.2623amborella_trichopodaERN1999152.985140.2985
g06952arabidopsis_hallerig06952.t169.672148.3607corylus_avellanaCav10g13270.t19.659096.70455
g06952arabidopsis_hallerig06952.t159.836146.7213corylus_avellanaCav06g19830.t170.873855.3398
g06952arabidopsis_hallerig06952.t154.91845.082gossypium_raimondiiKJB7267158.771948.2456
g06952arabidopsis_hallerig06952.t161.475451.6393gossypium_raimondiiKJB2519464.102653.8462
g06952arabidopsis_hallerig06952.t147.54140.1639gossypium_raimondiiKJB0987654.71746.2264
g06952arabidopsis_hallerig06952.t161.475450.8197gossypium_raimondiiKJB6028734.246628.3105
g06952arabidopsis_hallerig06952.t161.475451.6393gossypium_raimondiiKJB1994464.102653.8462
g06952arabidopsis_hallerig06952.t161.475450.8197gossypium_raimondiiKJB4849950.675741.8919
g06952arabidopsis_hallerig06952.t160.655750.8197gossypium_raimondiiKJB3409263.247952.9915
g06952arabidopsis_hallerig06952.t159.016445.9016brachypodium_distachyonKQJ8892750.349739.1608
g06952arabidopsis_hallerig06952.t156.557444.2623brachypodium_distachyonKQJ9191563.888950
g06952arabidopsis_hallerig06952.t143.442627.8689homo_sapiensENSP0000030247839.849625.5639
g06952arabidopsis_hallerig06952.t159.016446.7213fraxinus_excelsiorFRAEX38873_v2_000396490.1.cds35.820928.3582
g06952arabidopsis_hallerig06952.t154.098442.623fraxinus_excelsiorFRAEX38873_v2_000174400.1.cds66.666752.5253
g06952arabidopsis_hallerig06952.t159.016444.2623oryza_glumipatulaOGLUM12G06280.356.692942.5197
g06952arabidopsis_hallerig06952.t139.344330.3279oryza_glumipatulaOGLUM11G06590.176.190558.7302
g06952arabidopsis_hallerig06952.t158.196743.4426eragrostis_curvulaTVU2582143.827232.716
g06952arabidopsis_hallerig06952.t158.196743.4426eragrostis_curvulaTVU2584443.827232.716
g06952arabidopsis_hallerig06952.t143.442627.8689oryza_indicaBGIOSGA034278-PA42.063526.9841
g06952arabidopsis_hallerig06952.t159.016444.2623oryza_indicaBGIOSGA036485-PA66.666750
g06952arabidopsis_hallerig06952.t158.196747.541vitis_viniferaVitvi06g01732_P00167.61955.2381
g06952arabidopsis_hallerig06952.t158.196749.1803nicotiana_attenuataOIT0678167.61957.1429
g06952arabidopsis_hallerig06952.t159.836145.082coffea_canephoraCDP0436270.192352.8846
g06952arabidopsis_hallerig06952.t156.557444.2623ipomoea_trilobaitb13g13030.t166.990352.4272
g06952arabidopsis_hallerig06952.t155.737741.8033oryza_meridionalisOMERI11G05860.164.150948.1132
g06952arabidopsis_hallerig06952.t159.016444.2623oryza_meridionalisOMERI12G03750.234.123225.5924
g06952arabidopsis_hallerig06952.t155.737743.4426prunus_aviumPav_sc0001340.1_g060.1.mk:mrna63.551449.5327
g06952arabidopsis_hallerig06952.t143.442627.8689oryza_sativaOs11t0218100-0142.063526.9841
g06952arabidopsis_hallerig06952.t159.016444.2623oryza_sativaOs12t0194700-0166.666750
g06952arabidopsis_hallerig06952.t162.295150.8197pistacia_veracds-EVM0017319.171.02857.9439
g06952arabidopsis_hallerig06952.t159.836145.9016quercus_subercds-POE50916.168.224352.3364
g06952arabidopsis_hallerig06952.t155.737743.4426chenopodium_quinoaAUR62001716-RA:cds64.761950.4762
g06952arabidopsis_hallerig06952.t131.147525.4098chenopodium_quinoaAUR62020054-RA:cds53.521143.662
g06952arabidopsis_hallerig06952.t158.196747.541dioscorea_rotundataDRNTG_08659.166.355154.2056
g06952arabidopsis_hallerig06952.t161.475451.6393citrus_clementinaESR3822070.093558.8785
g06952arabidopsis_hallerig06952.t159.016444.2623juglans_regiacds.Jr14_09970_p166.666750
g06952arabidopsis_hallerig06952.t159.016444.2623juglans_regiacds.Jr14_09940_p166.666750
g06952arabidopsis_hallerig06952.t137.704924.5902ostreococcus_lucimarinusABO951624630
g06952arabidopsis_hallerig06952.t140.163925.4098saccharomyces_cerevisiaeYNL113W34.50721.831
g06952arabidopsis_hallerig06952.t160.655747.541actinidia_chinensisPSS0944968.518553.7037
g06952arabidopsis_hallerig06952.t158.196741.8033leersia_perrieriLPERR12G04980.152.205937.5
g06952arabidopsis_hallerig06952.t160.655746.7213leersia_perrieriLPERR11G06240.156.060643.1818
g06952arabidopsis_hallerig06952.t158.196745.082aegilops_tauschiiAET4Gv20227100.237.368428.9474
g06952arabidopsis_hallerig06952.t155.737743.4426musa_acuminataMa08_p05490.166.019451.4563
g06952arabidopsis_hallerig06952.t132.786922.9508selaginella_moellendorffiiEFJ3305678.431454.902
g06952arabidopsis_hallerig06952.t144.262331.1475selaginella_moellendorffiiEFJ1528358.695741.3043
g06952arabidopsis_hallerig06952.t145.08231.9672selaginella_moellendorffiiEFJ0834359.782642.3913
g06952arabidopsis_hallerig06952.t148.360733.6066selaginella_moellendorffiiEFJ0971558.415840.5941
g06952arabidopsis_hallerig06952.t159.016445.082panicum_halliiPUZ6324166.666750.9259
g06952arabidopsis_hallerig06952.t158.196742.623panicum_halliiPUZ4458266.981149.0566
g06952arabidopsis_hallerig06952.t175.409865.5738arabis_alpinaKFK4423379.310368.9655
g06952arabidopsis_hallerig06952.t178.688569.6721eutrema_salsugineumESQ514648070.8333
g06952arabidopsis_hallerig06952.t135.245928.6885kalanchoe_fedtschenkoiKaladp0053s0414.1.v1.156.578946.0526
g06952arabidopsis_hallerig06952.t159.016445.9016hordeum_vulgareHORVU.MOREX.r3.4HG0345330.166.666751.8519
g06952arabidopsis_hallerig06952.t158.196744.2623rosa_chinensisPRQ5636566.355150.4673
g06952arabidopsis_hallerig06952.t158.196745.082rosa_chinensisPRQ5005437.172828.7958
g06952arabidopsis_hallerig06952.t154.098440.1639oryza_barthiiOBART11G06860.167.346950
g06952arabidopsis_hallerig06952.t159.016444.2623oryza_barthiiOBART12G05410.166.666750
g06952arabidopsis_hallerig06952.t154.098441.8033corymbia_citriodoracds-KAF8032046.160.550546.789
g06952arabidopsis_hallerig06952.t158.196745.9016corymbia_citriodoracds-KAF7848374.165.137651.3761
g06952arabidopsis_hallerig06952.t158.196745.9016corymbia_citriodoracds-KAF8015706.165.137651.3761
g06952arabidopsis_hallerig06952.t172.950864.7541brassica_rapa_ro18A04p028010.1_BraROA.185.576975.9615
g06952arabidopsis_hallerig06952.t189.344377.8689brassica_rapa_ro18A05p018030.1_BraROA.184.496173.6434
g06952arabidopsis_hallerig06952.t159.016445.9016olea_europaeaOE9A082067C268.571453.3333
g06952arabidopsis_hallerig06952.t148.360740.1639olea_europaeaOE9A045171C137.341831.0127
g06952arabidopsis_hallerig06952.t154.91845.082eucalyptus_grandisKCW6339361.467950.4587
g06952arabidopsis_hallerig06952.t131.967224.5902eucalyptus_grandisKCW6339147.56136.5854
g06952arabidopsis_hallerig06952.t189.344378.6885camelina_sativaCsa05g034580.189.344378.6885
g06952arabidopsis_hallerig06952.t190.163978.6885camelina_sativaCsa16g015410.190.163978.6885
g06952arabidopsis_hallerig06952.t189.344377.8689camelina_sativaCsa07g014840.189.344377.8689
g06952arabidopsis_hallerig06952.t157.37743.4426daucus_carotaKZM9699649.295837.3239
g06952arabidopsis_hallerig06952.t159.016445.082digitaria_exilisDexi3A01G0005310.1:cds66.666750.9259
g06952arabidopsis_hallerig06952.t158.196743.4426digitaria_exilisDexi8B01G0007560.1:cds66.981150
g06952arabidopsis_hallerig06952.t156.557442.623eragrostis_tefEt_10A_000888.CDS41.818231.5152
g06952arabidopsis_hallerig06952.t158.196743.4426eragrostis_tefEt_6A_047625.CDS65.740749.0741
g06952arabidopsis_hallerig06952.t152.45940.1639eragrostis_tefEt_10B_003064.CDS64.646549.4949
g06952arabidopsis_hallerig06952.t159.016442.623eragrostis_tefEt_6B_049537.CDS66.666748.1481
g06952arabidopsis_hallerig06952.t157.37744.2623triticum_dicoccoidesTRIDC4AG032510.156.451643.5484
g06952arabidopsis_hallerig06952.t154.91842.623triticum_dicoccoidesTRIDC4BG016770.160.360446.8468
g06952arabidopsis_hallerig06952.t199.180398.3607arabidopsis_lyrataAl_scaffold_0004_137299.180398.3607
g06952arabidopsis_hallerig06952.t142.62328.6885saccharum_spontaneumSspon.07G0020240-1A-mRNA-1:cds34.666723.3333
g06952arabidopsis_hallerig06952.t141.803328.6885saccharum_spontaneumSspon.07G0020240-3D-mRNA-1:cds32.903222.5806
g06952arabidopsis_hallerig06952.t142.62328.6885saccharum_spontaneumSspon.07G0020240-2B-mRNA-1:cds32.911422.1519
g06952arabidopsis_hallerig06952.t156.557442.623saccharum_spontaneumSspon.05G0016250-2B-mRNA-1:cds64.48648.5981
g06952arabidopsis_hallerig06952.t156.557442.623saccharum_spontaneumSspon.05G0016250-4D-mRNA-1:cds64.48648.5981
g06952arabidopsis_hallerig06952.t159.016445.9016echinochloa_crusgalliscaffold70.414.cds46.451636.129
g06952arabidopsis_hallerig06952.t158.196742.623echinochloa_crusgalliscaffold355.18.cds66.981149.0566
g06952arabidopsis_hallerig06952.t159.016445.9016echinochloa_crusgalliscaffold83.374.cds67.924552.8302
g06952arabidopsis_hallerig06952.t157.37744.2623echinochloa_crusgalliscaffold247.57.cds66.037750.9434
g06952arabidopsis_hallerig06952.t159.836145.082echinochloa_crusgalliscaffold106.111.cds67.592650.9259
g06952arabidopsis_hallerig06952.t189.344378.6885brassica_oleraceaBo4g061420.184.496174.4186
g06952arabidopsis_hallerig06952.t163.114854.0984brassica_oleraceaBo4g169430.181.914970.2128
g06952arabidopsis_hallerig06952.t159.016444.2623oryza_nivaraONIVA12G05000.145.859934.3949
g06952arabidopsis_hallerig06952.t156.557445.9016trifolium_pratenseTp57577_TGAC_v2_mRNA462666.990354.3689
g06952arabidopsis_hallerig06952.t156.557445.082trifolium_pratenseTp57577_TGAC_v2_mRNA339443.94935.0318
g06952arabidopsis_hallerig06952.t156.557443.4426cynara_cardunculusKVI0364668.316852.4752

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression