Description

Ensembl ID g05656 Gene ID Accession -
Symbol Alias - Full Name Lysine--tRNA ligase, chloroplastic/mitochondrial
Status Confidence Length 1870 bases Strand Plus strand
Position FJVB01000010.1 : 95976 - 97845 RNA binding domain tRNA_anti-codon , tRNA-synt_2
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g05656 tRNA_anti-codon PF01336 1.9e-17 1
g05656 tRNA-synt_2 PF00152 8.1e-16 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g05656.t1 1116 320aa g05656.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g05656arabidopsis_hallerig05657.t100arabidopsis_hallerig05656.t100
g05656arabidopsis_hallerig15570.t100arabidopsis_hallerig05656.t100
g05656arabidopsis_hallerig05867.t126.612916.7742arabidopsis_hallerig05656.t151.562532.5
g05656arabidopsis_hallerig00569.t114.08458.02817arabidopsis_hallerig05656.t131.2517.8125
g05656arabidopsis_hallerig00874.t117.24148.89292arabidopsis_hallerig05656.t129.687515.3125
g05656arabidopsis_hallerig11406.t116.15388.07692arabidopsis_hallerig05656.t126.2513.125
g05656arabidopsis_hallerig11824.t111.00636.60377arabidopsis_hallerig05656.t121.87513.125
g05656arabidopsis_hallerig14753.t1.cds114.62968.14815arabidopsis_hallerig05656.t124.687513.75
g05656arabidopsis_hallerig03879.t115.71718.05501arabidopsis_hallerig05656.t12512.8125
g05656arabidopsis_hallerig24084.t114.51056.99301arabidopsis_hallerig05656.t125.937512.5
g05656arabidopsis_hallerig17138.t116.40218.11287arabidopsis_hallerig05656.t129.062514.375
g05656arabidopsis_hallerig17962.t19.824054.83871arabidopsis_hallerig05656.t120.937510.3125
g05656arabidopsis_hallerig31476.t118.918910.2317arabidopsis_hallerig05656.t130.62516.5625
g05656arabidopsis_hallerig29462.t123.154410.7383arabidopsis_hallerig05656.t121.562510

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g05656arabidopsis_hallerig05656.t160.312541.875chondrus_crispusCDF3955734.774824.1441
g05656arabidopsis_hallerig05656.t163.12547.5chlamydomonas_reinhardtiiPNW8282932.89924.7557
g05656arabidopsis_hallerig05656.t177.187564.0625papaver_somniferumRZC4591555.882446.3801
g05656arabidopsis_hallerig05656.t178.437562.1875papaver_somniferumRZC6751241.013132.5163
g05656arabidopsis_hallerig05656.t182.812568.75cannabis_sativa_femalecds.evm.model.08.195321.864718.1518
g05656arabidopsis_hallerig05656.t175.312556.5625physcomitrium_patensPp3c19_5720V3.137.833628.4144
g05656arabidopsis_hallerig05656.t183.437568.4375ficus_caricaFCD_00024358-RA:cds44.352236.3787
g05656arabidopsis_hallerig05656.t179.687566.25beta_vulgarisKMT1430543.814436.4261
g05656arabidopsis_hallerig05656.t18572.1875citrullus_lanatusCla97C02G050660.145.107838.3085
g05656arabidopsis_hallerig05656.t184.687572.5cucumis_sativusKGN5402144.94238.4743
g05656arabidopsis_hallerig05656.t181.87568.125theobroma_cacaoEOY0308439.817633.1307
g05656arabidopsis_hallerig05656.t199.062597.1875arabidopsis_thalianaAT3G13490.152.657851.6611
g05656arabidopsis_hallerig05656.t185.312572.8125cucumis_meloMELO3C014727.2.145.273638.6401
g05656arabidopsis_hallerig05656.t185.312573.125populus_trichocarpaPotri.003G221600.1.v4.146.192939.5939
g05656arabidopsis_hallerig05656.t195.62590brassica_junceacds.BjuB01g07930S51.428648.4034
g05656arabidopsis_hallerig05656.t192.812587.8125brassica_junceacds.BjuB07g22070S49.546.8333
g05656arabidopsis_hallerig05656.t195.312590.3125brassica_junceacds.BjuA05g31090S50.664548.0066
g05656arabidopsis_hallerig05656.t118.7515.9375brassica_napusCDX8253516.997214.4476
g05656arabidopsis_hallerig05656.t195.62590.625brassica_napusCDY2360950.915148.2529
g05656arabidopsis_hallerig05656.t195.312590.3125brassica_napusCDY4398650.748848.0865
g05656arabidopsis_hallerig05656.t185.937572.5malus_domestica_goldenmRNA:MD11G000300045.909938.7312
g05656arabidopsis_hallerig05656.t185.937573.75malus_domestica_goldenmRNA:MD03G000240045.986639.4649
g05656arabidopsis_hallerig05656.t173.7559.6875marchantia_polymorphaPTQ4909037.942130.7074
g05656arabidopsis_hallerig05656.t185.62572.1875prunus_dulcisVVA3184045.214538.1188
g05656arabidopsis_hallerig05656.t185.62572.1875prunus_persicaONH9897745.666738.5
g05656arabidopsis_hallerig05656.t184.062570.3125cajanus_cajanC.cajan_12032.t46.140738.5935
g05656arabidopsis_hallerig05656.t182.570glycine_maxKRH6647345.205538.3562
g05656arabidopsis_hallerig05656.t183.7571.25lupinus_angustifoliusOIW1762325.235421.4689
g05656arabidopsis_hallerig05656.t182.187569.6875medicago_truncatulaKEH1790245.501738.5813
g05656arabidopsis_hallerig05656.t182.187568.4375phaseolus_vulgarisESW0641845.111537.5643
g05656arabidopsis_hallerig05656.t18064.0625phaseolus_vulgarisESW0345851.241
g05656arabidopsis_hallerig05656.t183.12570pisum_sativumPsat0s3030g0040.1.cds45.547938.3562
g05656arabidopsis_hallerig05656.t183.437569.375vigna_radiataVradi09g05950.145.64137.9487
g05656arabidopsis_hallerig05656.t183.437570.3125vigna_unguiculataVigun10g014300.1.v1.245.797638.5935
g05656arabidopsis_hallerig05656.t183.437569.6875vigna_angularisKOM5859445.797638.2504
g05656arabidopsis_hallerig05656.t186.562575.625manihot_esculentaOAY5459446.790540.8784
g05656arabidopsis_hallerig05656.t181.562570.625capsicum_annuumPHT7398144.237338.3051
g05656arabidopsis_hallerig05656.t181.562570.625solanum_tuberosumPGSC0003DMT40008194244.463438.5009
g05656arabidopsis_hallerig05656.t181.562571.25solanum_lycopersicumSolyc01g005540.3.144.691839.0411
g05656arabidopsis_hallerig05656.t182.187571.5625sesamum_indicumSIN_1024269.t44.576338.8136
g05656arabidopsis_hallerig05656.t185.62573.125helianthus_annuusmRNA:HanXRQr2_Chr13g059028145.214538.6139
g05656arabidopsis_hallerig05656.t184.37571.5625lactuca_sativacds-PLY67479.145.685338.7479
g05656arabidopsis_hallerig05656.t17.54.6875lolium_perennecds.KYUSt_chr6.169227.453424.65839
g05656arabidopsis_hallerig05656.t176.2565.3125avena_sativa_ot3098cds.AVESA.00001b.r3.6Cg0003407.140.59934.7754
g05656arabidopsis_hallerig05656.t175.937565.3125avena_sativa_ot3098cds.AVESA.00001b.r3.6Dg0001085.440.771835.0671
g05656arabidopsis_hallerig05656.t176.2565.3125avena_sativa_ot3098cds.AVESA.00001b.r3.6Ag0001399.341.008435.126
g05656arabidopsis_hallerig05656.t175.937565.3125avena_sativa_sangAVESA.00010b.r2.6DG1164980.1.CDS41.326535.5442
g05656arabidopsis_hallerig05656.t176.2565.3125avena_sativa_sangAVESA.00010b.r2.6AG1035140.1.CDS41.496635.5442
g05656arabidopsis_hallerig05656.t176.2565avena_sativa_sangAVESA.00010b.r2.6CG1079390.1.CDS41.496635.3741
g05656arabidopsis_hallerig05656.t153.12545oryza_longistaminataKN538903.1_FGP01832.945727.907
g05656arabidopsis_hallerig05656.t177.187566.25oryza_rufipogonORUFI02G25950.143.639637.4558
g05656arabidopsis_hallerig05656.t175.937565.625oryza_brachyanthaOB02G34220.141.396935.7751
g05656arabidopsis_hallerig05656.t136.87533.75oryza_punctataOPUNC09G04710.126.940624.6575
g05656arabidopsis_hallerig05656.t176.87566.25oryza_glaberrimaORGLA02G0213200.141.979536.1775
g05656arabidopsis_hallerig05656.t17563.75secale_cerealeSECCE6Rv1G0398970.141.308135.1119
g05656arabidopsis_hallerig05656.t177.566.25setaria_viridisTKV9243142.538636.3636
g05656arabidopsis_hallerig05656.t177.565.3125sorghum_bicolorEER9314242.758636.0345
g05656arabidopsis_hallerig05656.t177.566.25setaria_italicaKQK8803842.538636.3636
g05656arabidopsis_hallerig05656.t175.937564.375triticum_aestivumTraesCS6A02G225200.141.68135.3345
g05656arabidopsis_hallerig05656.t175.937564.375triticum_aestivumTraesCS6D02G210000.141.968935.5786
g05656arabidopsis_hallerig05656.t175.937564.375triticum_aestivumTraesCS6B02G256400.141.896635.5172
g05656arabidopsis_hallerig05656.t177.812565zea_maysZm00001eb063750_P00242.710135.6775
g05656arabidopsis_hallerig05656.t174.37562.5ananas_comosusAco020675.1.mrna160.253250.6329
g05656arabidopsis_hallerig05656.t173.437562.1875ananas_comosusAco023509.1.mrna145.988338.9432
g05656arabidopsis_hallerig05656.t16.254.375ananas_comosusAco020677.1.mrna18.298765.80913
g05656arabidopsis_hallerig05656.t175.937563.125asparagus_officinalisONK7764734.863728.9813
g05656arabidopsis_hallerig05656.t175.937564.375triticum_turgidumTRITD6Av1G143880.341.68135.3345
g05656arabidopsis_hallerig05656.t175.937564.375triticum_turgidumTRITD6Bv1G134160.441.896635.5172
g05656arabidopsis_hallerig05656.t179.687566.875amborella_trichopodaERN0185144.117637.0242
g05656arabidopsis_hallerig05656.t182.812571.25corylus_avellanaCav10g00330.t155.907248.1013
g05656arabidopsis_hallerig05656.t181.2569.0625gossypium_raimondiiKJB2191343.993237.3942
g05656arabidopsis_hallerig05656.t175.312564.6875brachypodium_distachyonKQK0040141.337935.506
g05656arabidopsis_hallerig05656.t152.187546.875fraxinus_excelsiorFRAEX38873_v2_000211850.1.cds36.542732.8228
g05656arabidopsis_hallerig05656.t177.187566.25oryza_glumipatulaOGLUM02G24970.142.006836.0544
g05656arabidopsis_hallerig05656.t177.187566.875eragrostis_curvulaTVU1070442.078436.4566
g05656arabidopsis_hallerig05656.t177.187567.1875eragrostis_curvulaTVU1064342.881937.3264
g05656arabidopsis_hallerig05656.t166.2557.5oryza_indicaBGIOSGA006009-PA35.157530.5141
g05656arabidopsis_hallerig05656.t18572.5vitis_viniferaVitvi06g00043_P00145.945939.1892
g05656arabidopsis_hallerig05656.t181.87570.625nicotiana_attenuataOIT0523144.482238.3701
g05656arabidopsis_hallerig05656.t181.87566.875coffea_canephoraCDP1858939.457832.2289
g05656arabidopsis_hallerig05656.t183.437570.9375ipomoea_trilobaitb14g07330.t344.87438.1513
g05656arabidopsis_hallerig05656.t183.12571.25ipomoea_trilobaitb08g08570.t244.856738.4486
g05656arabidopsis_hallerig05656.t175.937564.375triticum_urartuTuG1812G0600002662.01.T0141.68135.3345
g05656arabidopsis_hallerig05656.t177.187566.25oryza_meridionalisOMERI02G24120.242.150236.1775
g05656arabidopsis_hallerig05656.t176.87566.25oryza_sativaOs02t0623500-0141.979536.1775
g05656arabidopsis_hallerig05656.t180.312568.4375pistacia_veracds-EVM0014104.144.082337.5643
g05656arabidopsis_hallerig05656.t183.7573.4375quercus_subercds-POF07358.145.81240.1709
g05656arabidopsis_hallerig05656.t154.687538.125galdieria_sulphurariaEME2907233.718723.5067
g05656arabidopsis_hallerig05656.t156.562542.5chenopodium_quinoaAUR62042626-RA:cds34.345425.8065
g05656arabidopsis_hallerig05656.t173.7560chenopodium_quinoaAUR62040899-RA:cds40.759933.1606
g05656arabidopsis_hallerig05656.t176.87563.75dioscorea_rotundataDRNTG_01067.141.979534.8123
g05656arabidopsis_hallerig05656.t184.062573.4375citrus_clementinaESR5882346.379340.5172
g05656arabidopsis_hallerig05656.t185.312574.0625juglans_regiacds.Jr14_22040_p146.349740.2377
g05656arabidopsis_hallerig05656.t163.7542.8125ostreococcus_lucimarinusABO9873733.607922.57
g05656arabidopsis_hallerig05656.t18571.875actinidia_chinensisPSR8691145.945938.8514
g05656arabidopsis_hallerig05656.t186.87573.125actinidia_chinensisPSR9027046.026538.7417
g05656arabidopsis_hallerig05656.t176.562565leersia_perrieriLPERR02G20120.140.42934.3234
g05656arabidopsis_hallerig05656.t175.937564.375aegilops_tauschiiAET6Gv20599900.440.231834.106
g05656arabidopsis_hallerig05656.t178.437566.5625musa_acuminataMa08_p28800.142.398635.9797
g05656arabidopsis_hallerig05656.t159.37548.4375selaginella_moellendorffiiEFJ3508139.175331.9588
g05656arabidopsis_hallerig05656.t19.3757.8125selaginella_moellendorffiiEFJ1739510.20418.5034
g05656arabidopsis_hallerig05656.t159.37548.4375selaginella_moellendorffiiEFJ1739737.475330.572
g05656arabidopsis_hallerig05656.t19.3757.8125selaginella_moellendorffiiEFJ3508310.4538.7108
g05656arabidopsis_hallerig05656.t176.562565.3125panicum_halliiPUZ6087241.952135.7877
g05656arabidopsis_hallerig05656.t195.62592.1875arabis_alpinaKFK3868150.915149.0849
g05656arabidopsis_hallerig05656.t185.62574.0625quercus_lobataQL01p003604:mrna46.598640.3061
g05656arabidopsis_hallerig05656.t197.187592.8125eutrema_salsugineumESQ4866350.983648.6885
g05656arabidopsis_hallerig05656.t180.937567.5kalanchoe_fedtschenkoiKaladp0037s0237.1.v1.144.19836.8601
g05656arabidopsis_hallerig05656.t175.937564.6875hordeum_vulgareHORVU.MOREX.r3.6HG0596160.141.752635.567
g05656arabidopsis_hallerig05656.t184.062571.875rosa_chinensisPRQ3579546.219939.5189
g05656arabidopsis_hallerig05656.t177.187566.25oryza_barthiiOBART02G24570.141.166735.3333
g05656arabidopsis_hallerig05656.t176.2557.1875chara_brauniiGBG6477231.402823.5521
g05656arabidopsis_hallerig05656.t185.312573.125corymbia_citriodoracds-KAF8035379.145.959639.3939
g05656arabidopsis_hallerig05656.t194.062589.6875brassica_rapa_ro18A05p046010.1_BraROA.164.731261.7204
g05656arabidopsis_hallerig05656.t183.437572.8125olea_europaeaOE9A013118C144.87439.1597
g05656arabidopsis_hallerig05656.t180.937570.9375olea_europaeaOE9A116139C442.528737.2742
g05656arabidopsis_hallerig05656.t185.62573.75eucalyptus_grandisKCW5234845.896139.531
g05656arabidopsis_hallerig05656.t166.87546.875cyanidioschyzon_merolaeCMO044CT35.197424.6711
g05656arabidopsis_hallerig05656.t198.7597.5camelina_sativaCsa01g015800.152.491751.8272
g05656arabidopsis_hallerig05656.t198.437597.1875camelina_sativaCsa15g017620.152.325651.6611
g05656arabidopsis_hallerig05656.t198.437597.1875camelina_sativaCsa19g018830.152.325651.6611
g05656arabidopsis_hallerig05656.t182.187570.9375daucus_carotaKZM8052344.201738.1513
g05656arabidopsis_hallerig05656.t165.937556.25digitaria_exilisDexi5B01G0009600.1:cds39.146633.3952
g05656arabidopsis_hallerig05656.t176.87565.625digitaria_exilisDexi1B01G0012810.1:cds48.520741.4201
g05656arabidopsis_hallerig05656.t163.12552.8125digitaria_exilisDexi1A01G0013650.1:cds51.794943.3333
g05656arabidopsis_hallerig05656.t175.937566.25eragrostis_tefEt_2A_015665.CDS47.553841.4873
g05656arabidopsis_hallerig05656.t175.937566.25eragrostis_tefEt_2B_019804.CDS52.258145.5914
g05656arabidopsis_hallerig05656.t170.312560.9375triticum_dicoccoidesTRIDC6BG041770.142.533136.862
g05656arabidopsis_hallerig05656.t170.937561.25triticum_dicoccoidesTRIDC6AG035090.342.669236.8421
g05656arabidopsis_hallerig05656.t198.7597.5arabidopsis_lyratafgenesh2_kg.3__1436__AT3G13490.152.404651.7413
g05656arabidopsis_hallerig05656.t14.68753.75saccharum_spontaneumSspon.01G0032030-1A-mRNA-1:cds7.042255.6338
g05656arabidopsis_hallerig05656.t176.562564.375saccharum_spontaneumSspon.01G0032030-3D-mRNA-1:cds54.565745.8797
g05656arabidopsis_hallerig05656.t113.12510.9375saccharum_spontaneumSspon.01G0032030-2B-mRNA-12420
g05656arabidopsis_hallerig05656.t177.564.375nymphaea_colorataNC3G0207380.1:cds56.880747.2477
g05656arabidopsis_hallerig05656.t171.562561.5625echinochloa_crusgalliscaffold19.743.cds24.413621.0021
g05656arabidopsis_hallerig05656.t176.87566.25echinochloa_crusgalliscaffold274.36.cds42.051336.2393
g05656arabidopsis_hallerig05656.t178.12566.875echinochloa_crusgalliscaffold57.391.cds37.707432.2775
g05656arabidopsis_hallerig05656.t195.62590.625brassica_oleraceaBo5g132450.150.915148.2529
g05656arabidopsis_hallerig05656.t181.562568.75corchorus_capsularisOMO6027344.162437.225
g05656arabidopsis_hallerig05656.t177.187566.25oryza_nivaraONIVA02G26900.241.793635.8714
g05656arabidopsis_hallerig05656.t17061.875trifolium_pratenseTp57577_TGAC_v2_mRNA3319167.878860
g05656arabidopsis_hallerig05656.t185.62572.8125cynara_cardunculusKVH9085647.07940.0344

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression