RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	g05640	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	877 bases	Strand	Minus strand
Position	FJVB01000010.1 : 14965 - 15841	RNA binding domain	RLI
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
g05640	RLI	PF04068	3.8e-15	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	g05640.t1	607	126aa	g05640.t1

Gene Model

Click here to download g05640's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download g05640's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
g05640

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
g05640	arabidopsis_halleri	g05640.t1	24.6032	21.4286	brassica_napus	CDY55920	32.9787	28.7234
g05640	arabidopsis_halleri	g05640.t1	38.0952	34.127	brassica_napus	CDY57670	36.3636	32.5758
g05640	arabidopsis_halleri	g05640.t1	26.9841	22.2222	brassica_napus	CDY57672	35.7895	29.4737
g05640	arabidopsis_halleri	g05640.t1	38.0952	33.3333	brassica_napus	CDY72041	36.3636	31.8182
g05640	arabidopsis_halleri	g05640.t1	26.9841	24.6032	oryza_longistaminata	AMDW01012339.1_FGP001	100	91.1765

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression