Description

Ensembl ID g05547 Gene ID Accession -
Symbol Alias - Full Name TTN1
Status Confidence Length 9499 bases Strand Plus strand
Position FJVB01000009.1 : 1824182 - 1833680 RNA binding domain tRNA_anti-codon , tRNA-synt_2
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g05547 tRNA_anti-codon PF01336 7.2e-13 1
g05547 tRNA-synt_2 PF00152 1.1e-77 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g05547.t1 5717 1805aa g05547.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g05547arabidopsis_hallerig08517.t186.553980.5153arabidopsis_hallerig05547.t159.556855.4017

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g05547arabidopsis_hallerig05547.t117.894711.5789chondrus_crispusCDF3656847.084530.4665
g05547arabidopsis_hallerig05547.t136.343524.1551chlamydomonas_reinhardtiiPNW7461447.364631.4801
g05547arabidopsis_hallerig05547.t153.296443.8781papaver_somniferumRZC5400775.74862.3622
g05547arabidopsis_hallerig05547.t153.961244.4321papaver_somniferumRZC7335576.093862.6562
g05547arabidopsis_hallerig05547.t150.193942.1053cannabis_sativa_femalecds.evm.model.02.186476.844864.4614
g05547arabidopsis_hallerig05547.t142.382330.3047physcomitrium_patensPp3c2_18070V3.159.812442.7678
g05547arabidopsis_hallerig05547.t137.396131.1911ficus_caricaFCD_00024911-RA:cds72.737160.6681
g05547arabidopsis_hallerig05547.t110.80337.86704ficus_caricaFCD_00024914-RA:cds73.863653.7879
g05547arabidopsis_hallerig05547.t154.016644.7645beta_vulgarisKMT0005976.410763.3229
g05547arabidopsis_hallerig05547.t153.573444.6537citrullus_lanatusCla97C06G109780.176.141763.4646
g05547arabidopsis_hallerig05547.t154.016644.7091cucumis_sativusKGN4625576.771763.5433
g05547arabidopsis_hallerig05547.t155.844947.9778theobroma_cacaoEOX9625979.307668.1353
g05547arabidopsis_hallerig05547.t168.14466.9252arabidopsis_thalianaAT3G60740.198.086196.3317
g05547arabidopsis_hallerig05547.t153.573444.5983cucumis_meloMELO3C022488.2.176.563763.7371
g05547arabidopsis_hallerig05547.t154.07245.7064populus_trichocarpaPotri.014G067400.3.v4.177.583565.5803
g05547arabidopsis_hallerig05547.t155.789546.5374malus_domestica_goldenmRNA:MD02G026130079.166766.0377
g05547arabidopsis_hallerig05547.t126.038823.1025malus_domestica_goldenmRNA:MD07G000690078.333369.5
g05547arabidopsis_hallerig05547.t126.20521.3296malus_domestica_goldenmRNA:MD07G000680076.537262.2977
g05547arabidopsis_hallerig05547.t144.044331.856marchantia_polymorphaPTQ4056863.346645.8167
g05547arabidopsis_hallerig05547.t156.177347.5346prunus_dulcisVVA3432979.529467.2941
g05547arabidopsis_hallerig05547.t155.900347.2022prunus_persicaONI2263879.137366.8235
g05547arabidopsis_hallerig05547.t146.869838.4488cajanus_cajanC.cajan_08095.t72.245959.2656
g05547arabidopsis_hallerig05547.t154.847645.4294glycine_maxKRG9073878.137364.7198
g05547arabidopsis_hallerig05547.t154.90345.097glycine_maxKRH3602178.27864.297
g05547arabidopsis_hallerig05547.t149.806142.1053lupinus_angustifoliusOIV9095977.035165.1243
g05547arabidopsis_hallerig05547.t152.797843.9889medicago_truncatulaKEH4431474.921462.4214
g05547arabidopsis_hallerig05547.t155.069345.5956phaseolus_vulgarisESW1484778.51565.0079
g05547arabidopsis_hallerig05547.t152.520843.3795pisum_sativumPsat6g230960.1.cds74.411361.46
g05547arabidopsis_hallerig05547.t152.4143.1579vigna_radiataVradi08g21750.176.848163.2819
g05547arabidopsis_hallerig05547.t155.124745.7064vigna_unguiculataVigun07g275100.1.v1.278.53265.1144
g05547arabidopsis_hallerig05547.t155.069345.7064vigna_angularisKOM3637378.02264.7567
g05547arabidopsis_hallerig05547.t155.290946.482manihot_esculentaOAY4933078.893366.3241
g05547arabidopsis_hallerig05547.t147.756239.723capsicum_annuumPHT9544675.61462.8947
g05547arabidopsis_hallerig05547.t121.052616.2327capsicum_annuumPHT8667165.972250.8681
g05547arabidopsis_hallerig05547.t136.620530.5817solanum_tuberosumPGSC0003DMT40006678874.943362.585
g05547arabidopsis_hallerig05547.t117.950115.2909solanum_lycopersicumSolyc01g091090.3.17563.8889
g05547arabidopsis_hallerig05547.t131.911425.8726solanum_lycopersicumSolyc01g091080.3.171.552858.0124
g05547arabidopsis_hallerig05547.t154.515245.2632sesamum_indicumSIN_1025083.t77.848164.6361
g05547arabidopsis_hallerig05547.t153.296444.3213helianthus_annuusmRNA:HanXRQr2_Chr04g018525177.145164.154
g05547arabidopsis_hallerig05547.t153.130243.3795lactuca_sativacds-PLY77389.176.781462.6902
g05547arabidopsis_hallerig05547.t154.515241.5512lolium_perennecds.KYUSt_chr1.2283448.688837.1103
g05547arabidopsis_hallerig05547.t150.914140.4986avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0000705.570.259955.8868
g05547arabidopsis_hallerig05547.t150.692540.1662avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0000723.470.114955.5556
g05547arabidopsis_hallerig05547.t128.088622.9917avena_sativa_ot3098cds.AVESA.00001b.r3.1Cg0001374.171.81358.7819
g05547arabidopsis_hallerig05547.t149.861539.6676avena_sativa_sangAVESA.00010b.r2.1DG0180340.1.CDS71.770357.0973
g05547arabidopsis_hallerig05547.t120.332415.6787avena_sativa_sangAVESA.00010b.r2.1CG0087850.1.CDS68.98553.1955
g05547arabidopsis_hallerig05547.t128.033222.9917avena_sativa_sangAVESA.00010b.r2.1CG0087840.1.CDS74.631361.2094
g05547arabidopsis_hallerig05547.t134.958528.144avena_sativa_sangAVESA.00010b.r2.1AG0061800.1.CDS74.322759.8351
g05547arabidopsis_hallerig05547.t114.515211.1357avena_sativa_sangAVESA.00010b.r2.1AG0061790.1.CDS65.829150.5025
g05547arabidopsis_hallerig05547.t142.936333.4626oryza_longistaminataKN539559.1_FGP00472.227456.2908
g05547arabidopsis_hallerig05547.t149.252139.0582oryza_rufipogonORUFI10G16260.171.46356.672
g05547arabidopsis_hallerig05547.t148.642738.2825oryza_brachyanthaOB10G22380.170.296255.3243
g05547arabidopsis_hallerig05547.t150.637140.1662oryza_punctataOPUNC10G13760.171.017956.3326
g05547arabidopsis_hallerig05547.t150.526340.1662secale_cerealeSECCE1Rv1G0028080.172.037957.267
g05547arabidopsis_hallerig05547.t151.246540.4432setaria_viridisTKV9296972.152956.9423
g05547arabidopsis_hallerig05547.t151.246540.6094sorghum_bicolorOQU9152972.265657.2656
g05547arabidopsis_hallerig05547.t149.307538.7258setaria_italicaKQK8841971.143155.8753
g05547arabidopsis_hallerig05547.t150.470940triticum_aestivumTraesCS1D02G178400.171.845456.9401
g05547arabidopsis_hallerig05547.t150.526340triticum_aestivumTraesCS1A02G180200.171.924356.9401
g05547arabidopsis_hallerig05547.t150.360139.9446triticum_aestivumTraesCS1B02G200300.171.687756.8612
g05547arabidopsis_hallerig05547.t150.969540.3878zea_maysZm00001eb220640_P00371.987557.0423
g05547arabidopsis_hallerig05547.t152.631641.7729ananas_comosusAco016273.1.mrna175.697260.0797
g05547arabidopsis_hallerig05547.t129.196722.8255asparagus_officinalisONK5596470.454555.0802
g05547arabidopsis_hallerig05547.t115.512512.41asparagus_officinalisONK5596576.923161.5385
g05547arabidopsis_hallerig05547.t147.756238.0609triticum_turgidumTRITD1Av1G117660.473.112858.2697
g05547arabidopsis_hallerig05547.t147.86738.1163triticum_turgidumTRITD1Bv1G118160.672.666157.8638
g05547arabidopsis_hallerig05547.t129.085916.0111caenorhabditis_elegansF16D3.4.145.141924.8495
g05547arabidopsis_hallerig05547.t132.520820drosophila_melanogasterFBpp007750249.369230.3616
g05547arabidopsis_hallerig05547.t150.969541.8283amborella_trichopodaERN1566173.541260.3517
g05547arabidopsis_hallerig05547.t113.961211.8006corylus_avellanaCav01g28220.t187.573.9583
g05547arabidopsis_hallerig05547.t155.124747.036gossypium_raimondiiKJB6147377.978166.536
g05547arabidopsis_hallerig05547.t150.526340.554brachypodium_distachyonKQJ9745271.641857.502
g05547arabidopsis_hallerig05547.t134.293621.7729homo_sapiensENSP0000034771951.929532.9698
g05547arabidopsis_hallerig05547.t16.426594.70914fraxinus_excelsiorFRAEX38873_v2_000044990.1.cds72.95653.4591
g05547arabidopsis_hallerig05547.t148.421140.277fraxinus_excelsiorFRAEX38873_v2_000105030.1.cds77.004464.0529
g05547arabidopsis_hallerig05547.t150.858740.4986oryza_glumipatulaOGLUM10G15170.271.83157.1987
g05547arabidopsis_hallerig05547.t151.301939.9446eragrostis_curvulaTVU3204971.066855.3338
g05547arabidopsis_hallerig05547.t146.648236.6759oryza_indicaBGIOSGA031579-PA72.212756.7753
g05547arabidopsis_hallerig05547.t113.96128.47645vitis_viniferaVitvi07g04405_P00153.27732.3467
g05547arabidopsis_hallerig05547.t153.573444.5429nicotiana_attenuataOIT0726576.624463.7084
g05547arabidopsis_hallerig05547.t153.24143.4903coffea_canephoraCDO9771376.088762.1536
g05547arabidopsis_hallerig05547.t153.573445.2078ipomoea_trilobaitb04g02430.t175.843164
g05547arabidopsis_hallerig05547.t150.526340triticum_urartuTuG1812G0100002154.01.T0171.924356.9401
g05547arabidopsis_hallerig05547.t149.085938.7258oryza_meridionalisOMERI10G11970.171.221956.1897
g05547arabidopsis_hallerig05547.t133.185627.2022prunus_aviumPav_sc0005891.1_g040.1.mk:mrna75.345961.761
g05547arabidopsis_hallerig05547.t128.587323.8781prunus_aviumPav_sc0007337.1_g010.1.mk:mrna75.54963.104
g05547arabidopsis_hallerig05547.t122.936317.5069oryza_sativaOs10t0508500-0069.230852.8428
g05547arabidopsis_hallerig05547.t155.844948.3657pistacia_veracds-EVM0025450.180.254869.5064
g05547arabidopsis_hallerig05547.t155.623347.1468quercus_subercds-POF08661.178.560266.5884
g05547arabidopsis_hallerig05547.t127.977815.1801galdieria_sulphurariaEME3156442.472723.0446
g05547arabidopsis_hallerig05547.t128.753517.4515ciona_savignyiENSCSAVP0000000240550.339530.5529
g05547arabidopsis_hallerig05547.t152.576243.6011chenopodium_quinoaAUR62004186-RA:cds75.980863.0104
g05547arabidopsis_hallerig05547.t118.781215.3463chenopodium_quinoaAUR62044221-RA:cds69.467256.7623
g05547arabidopsis_hallerig05547.t154.238244.6537chenopodium_quinoaAUR62013659-RA:cds51.798942.6455
g05547arabidopsis_hallerig05547.t119.390615.5679dioscorea_rotundataDRNTG_24762.374.626959.9147
g05547arabidopsis_hallerig05547.t17.091415.81717dioscorea_rotundataDRNTG_02852.1.cds173.142960
g05547arabidopsis_hallerig05547.t121.717516.0665dioscorea_rotundataDRNTG_30807.169.257951.2367
g05547arabidopsis_hallerig05547.t154.792247.3684citrus_clementinaESR5853278.930668.2362
g05547arabidopsis_hallerig05547.t155.401746.5374juglans_regiacds.Jr05_03590_p178.678266.0897
g05547arabidopsis_hallerig05547.t132.631621.0526ostreococcus_lucimarinusABO9664249.124331.6931
g05547arabidopsis_hallerig05547.t153.961245.1524actinidia_chinensisPSS2414777.240364.6312
g05547arabidopsis_hallerig05547.t154.182845.4848actinidia_chinensisPSS2157077.434765.004
g05547arabidopsis_hallerig05547.t149.695339.5014leersia_perrieriLPERR10G11610.171.190556.5873
g05547arabidopsis_hallerig05547.t150.526340aegilops_tauschiiAET1Gv20464900.171.924356.9401
g05547arabidopsis_hallerig05547.t151.468141.662musa_acuminataMa11_p03560.373.034659.1195
g05547arabidopsis_hallerig05547.t143.767332.0222selaginella_moellendorffiiEFJ1092064.332247.0684
g05547arabidopsis_hallerig05547.t143.656531.856selaginella_moellendorffiiEFJ2589764.274146.9005
g05547arabidopsis_hallerig05547.t150.914140.7756panicum_halliiPUZ3834971.62957.3656
g05547arabidopsis_hallerig05547.t111.800610.4709quercus_lobataQL04p040032:mrna84.860675.2988
g05547arabidopsis_hallerig05547.t144.321336.7313quercus_lobataQL04p040018:mrna78.12564.7461
g05547arabidopsis_hallerig05547.t153.850444.9861kalanchoe_fedtschenkoiKaladp0015s0055.1.v1.177.081764.3933
g05547arabidopsis_hallerig05547.t150.637140.0554hordeum_vulgareHORVU.MOREX.r3.1HG0050160.172.025256.974
g05547arabidopsis_hallerig05547.t155.567947.6454rosa_chinensisPRQ5692078.790367.557
g05547arabidopsis_hallerig05547.t149.252139.1136oryza_barthiiOBART10G15280.171.46356.7524
g05547arabidopsis_hallerig05547.t129.252119.723chara_brauniiGBG5901749.577533.4272
g05547arabidopsis_hallerig05547.t155.235546.5374corymbia_citriodoracds-KAF8028380.178.565866.1939
g05547arabidopsis_hallerig05547.t154.736845.4848olea_europaeaOE9A034512C377.429564.3417
g05547arabidopsis_hallerig05547.t139.224432.7978eucalyptus_grandisKCW7301676.956564.3478
g05547arabidopsis_hallerig05547.t111.85610.2493eucalyptus_grandisKCW7301584.58573.1225
g05547arabidopsis_hallerig05547.t163.434960.6094camelina_sativaCsa07g004160.180.690677.0965
g05547arabidopsis_hallerig05547.t114.182811.9668camelina_sativaCsa05g092880.167.904557.2944
g05547arabidopsis_hallerig05547.t165.65162.9363camelina_sativaCsa05g092560.194.422390.5179
g05547arabidopsis_hallerig05547.t165.983463.6565camelina_sativaCsa16g004150.194.900491.5538
g05547arabidopsis_hallerig05547.t153.79544.2105daucus_carotaKZM9674377.555963.738
g05547arabidopsis_hallerig05547.t145.540236.3435digitaria_exilisDexi9A01G0018700.1:cds69.838655.7349
g05547arabidopsis_hallerig05547.t143.434934.7368digitaria_exilisDexi9B01G0018180.1:cds7055.9821
g05547arabidopsis_hallerig05547.t147.977837.3407eragrostis_tefEt_1B_011808.CDS70.178354.6191
g05547arabidopsis_hallerig05547.t140.83131.6898eragrostis_tefEt_1A_006973.CDS71.692655.642
g05547arabidopsis_hallerig05547.t150.526340triticum_dicoccoidesTRIDC1AG027490.271.924356.9401
g05547arabidopsis_hallerig05547.t150.415540triticum_dicoccoidesTRIDC1BG033540.171.766656.9401
g05547arabidopsis_hallerig05547.t168.642767.9224arabidopsis_lyratascaffold_503309.198.725197.6892
g05547arabidopsis_hallerig05547.t18.365657.03601saccharum_spontaneumSspon.01G0021130-1A-mRNA-1.cds185.310771.7514
g05547arabidopsis_hallerig05547.t146.038835.4017nymphaea_colorataNC4G0023080.1:cds70.008453.8332
g05547arabidopsis_hallerig05547.t148.975138.8366echinochloa_crusgalliscaffold378.43.cds73.851358.5631
g05547arabidopsis_hallerig05547.t151.578940.4986echinochloa_crusgalliscaffold27.561.cds72.338856.7988
g05547arabidopsis_hallerig05547.t151.578940.7756echinochloa_crusgalliscaffold1.1027.cds72.338857.1873
g05547arabidopsis_hallerig05547.t149.030541.5512corchorus_capsularisOMO7855982.55669.9627
g05547arabidopsis_hallerig05547.t150.858740.554oryza_nivaraONIVA04G21510.171.83157.277
g05547arabidopsis_hallerig05547.t154.016645.8172trifolium_pratenseTp57577_TGAC_v2_mRNA248576.650965.0157
g05547arabidopsis_hallerig05547.t150.747942.7701cynara_cardunculusKVH8920376.269864.2798

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression