Description

Ensembl ID g05185 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 1797 bases Strand Plus strand
Position FJVB01000009.1 : 256153 - 257949 RNA binding domain 2OG-FeII_Oxy_2
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g05185 2OG-FeII_Oxy_2 PF13532 7.6e-12 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g05185.t1 984 241aa g05185.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g05185arabidopsis_hallerig09096.t137.219721.0762arabidopsis_hallerig05185.t134.439819.5021
g05185arabidopsis_hallerig26153.t118.78319.52381arabidopsis_hallerig05185.t129.460614.9378
g05185arabidopsis_hallerig16102.t226.011615.0289arabidopsis_hallerig05185.t137.344421.5768

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g05185arabidopsis_hallerig05185.t154.771837.3444chlamydomonas_reinhardtiiPNW7345929.333320
g05185arabidopsis_hallerig05185.t146.88839.0042papaver_somniferumRZC8332841.851934.8148
g05185arabidopsis_hallerig05185.t170.954457.6763papaver_somniferumRZC7911353.60543.5737
g05185arabidopsis_hallerig05185.t166.3948.1328physcomitrium_patensPp3c2_18510V3.459.925143.4457
g05185arabidopsis_hallerig05185.t160.16651.0373ficus_caricaFCD_00025601-RA:cds65.022455.157
g05185arabidopsis_hallerig05185.t170.124559.3361beta_vulgarisKMT135376555
g05185arabidopsis_hallerig05185.t170.954460.9958citrullus_lanatusCla97C01G014070.168.951659.2742
g05185arabidopsis_hallerig05185.t170.124559.3361cucumis_sativusKGN4832667.657.2
g05185arabidopsis_hallerig05185.t173.44463.0705theobroma_cacaoEOY0878653.153245.6456
g05185arabidopsis_hallerig05185.t195.850692.5311arabidopsis_thalianaAT4G20350.295.850692.5311
g05185arabidopsis_hallerig05185.t170.954460.9958cucumis_meloMELO3C024592.2.168.458.8
g05185arabidopsis_hallerig05185.t172.614161.4108populus_trichocarpaPotri.013G161600.6.v4.166.539956.2738
g05185arabidopsis_hallerig05185.t185.477280.9129brassica_napusCDX7898738.794736.7232
g05185arabidopsis_hallerig05185.t186.307180.4979brassica_napusCDX8275738.878536.2617
g05185arabidopsis_hallerig05185.t162.655654.7718malus_domestica_goldenmRNA:MD11G000020063.983155.9322
g05185arabidopsis_hallerig05185.t162.240748.5477marchantia_polymorphaPTQ4755657.034244.4867
g05185arabidopsis_hallerig05185.t172.614161.4108prunus_dulcisVVA3180565.789555.6391
g05185arabidopsis_hallerig05185.t172.614161.8257prunus_dulcisVVA3995565.789556.015
g05185arabidopsis_hallerig05185.t172.199260.5809prunus_persicaONH9892765.413554.8872
g05185arabidopsis_hallerig05185.t173.858962.6556cajanus_cajanC.cajan_06509.t67.680657.4144
g05185arabidopsis_hallerig05185.t173.858962.6556glycine_maxKRH0926367.680657.4144
g05185arabidopsis_hallerig05185.t173.02961.4108glycine_maxKRH3876066.920256.2738
g05185arabidopsis_hallerig05185.t173.44462.6556lupinus_angustifoliusOIV9895665.555655.9259
g05185arabidopsis_hallerig05185.t173.858962.2407medicago_truncatulaAES7576466.917356.391
g05185arabidopsis_hallerig05185.t170.954459.751phaseolus_vulgarisESW2444466.023255.5985
g05185arabidopsis_hallerig05185.t174.273963.0705pisum_sativumPsat1g112800.1.cds67.547257.3585
g05185arabidopsis_hallerig05185.t150.622439.4191vigna_radiataVradi01g06540.150.833339.5833
g05185arabidopsis_hallerig05185.t172.199260.5809vigna_unguiculataVigun04g169800.2.v1.266.666755.9387
g05185arabidopsis_hallerig05185.t170.954460.166vigna_angularisKOM5467866.023255.9846
g05185arabidopsis_hallerig05185.t172.614161.4108manihot_esculentaOAY2396666.037755.8491
g05185arabidopsis_hallerig05185.t169.709559.3361capsicum_annuumPHT9412163.396253.9623
g05185arabidopsis_hallerig05185.t133.6127.3859solanum_tuberosumPGSC0003DMT40006840652.258142.5806
g05185arabidopsis_hallerig05185.t167.634957.6763solanum_lycopersicumSolyc01g057570.3.162.452153.2567
g05185arabidopsis_hallerig05185.t170.539459.751helianthus_annuusmRNA:HanXRQr2_Chr01g003295168.825958.2996
g05185arabidopsis_hallerig05185.t168.464758.0913lactuca_sativacds-PLY62474.170.512859.8291
g05185arabidopsis_hallerig05185.t170.124557.6763lolium_perennecds.KYUSt_chr3.2333360.791450
g05185arabidopsis_hallerig05185.t170.954457.6763avena_sativa_ot3098cds.AVESA.00001b.r3.1Cg0001213.154.983944.6945
g05185arabidopsis_hallerig05185.t172.199258.5062avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0000583.161.052649.4737
g05185arabidopsis_hallerig05185.t171.784258.0913avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0000610.160.701849.1228
g05185arabidopsis_hallerig05185.t149.792541.0788avena_sativa_sangAVESA.00010b.r2.1DG0182680.1.CDS68.571456.5714
g05185arabidopsis_hallerig05185.t170.954457.6763avena_sativa_sangAVESA.00010b.r2.1CG0092210.1.CDS59.790248.6014
g05185arabidopsis_hallerig05185.t160.580948.1328avena_sativa_sangAVESA.00010b.r2.2CG0272110.1.CDS55.094343.7736
g05185arabidopsis_hallerig05185.t170.539458.5062oryza_longistaminataKN539196.1_FGP00961.151150.7194
g05185arabidopsis_hallerig05185.t172.199258.5062oryza_rufipogonORUFI10G10780.161.267649.6479
g05185arabidopsis_hallerig05185.t136.929527.3859oryza_brachyanthaOB10G18090.154.268340.2439
g05185arabidopsis_hallerig05185.t172.199259.3361oryza_punctataOPUNC10G08930.161.484150.53
g05185arabidopsis_hallerig05185.t173.02959.3361oryza_glaberrimaORGLA10G0088800.161.971850.3521
g05185arabidopsis_hallerig05185.t170.539458.0913secale_cerealeSECCE3Rv1G0159760.160.070749.47
g05185arabidopsis_hallerig05185.t172.199256.4315setaria_viridisTKV9403860.416747.2222
g05185arabidopsis_hallerig05185.t169.709555.1867sorghum_bicolorEER9422658.131546.0208
g05185arabidopsis_hallerig05185.t171.784256.0166setaria_italicaKQK8923460.069446.875
g05185arabidopsis_hallerig05185.t169.294656.4315triticum_aestivumTraesCS3B02G113400.159.010648.0565
g05185arabidopsis_hallerig05185.t171.369357.2614triticum_aestivumTraesCS3A02G097700.160.563448.5915
g05185arabidopsis_hallerig05185.t170.539457.2614triticum_aestivumTraesCS3D02G098200.150.746341.194
g05185arabidopsis_hallerig05185.t170.539455.6017zea_maysZm00001eb047810_P00157.823145.5782
g05185arabidopsis_hallerig05185.t140.24931.1203ananas_comosusAco001689.1.mrna156.725143.8596
g05185arabidopsis_hallerig05185.t162.655652.2822asparagus_officinalisONK6281363.983153.3898
g05185arabidopsis_hallerig05185.t171.369357.2614triticum_turgidumTRITD3Av1G029270.260.563448.5915
g05185arabidopsis_hallerig05185.t169.294656.4315triticum_turgidumTRITD3Bv1G033420.259.010648.0565
g05185arabidopsis_hallerig05185.t150.622436.5145caenorhabditis_elegansB0564.2a.152.813938.0952
g05185arabidopsis_hallerig05185.t151.452335.6846drosophila_melanogasterFBpp010002054.38637.7193
g05185arabidopsis_hallerig05185.t170.539458.0913amborella_trichopodaERM9723368.548456.4516
g05185arabidopsis_hallerig05185.t174.273964.7303corylus_avellanaCav11g00010.t167.80359.0909
g05185arabidopsis_hallerig05185.t156.846551.0373gossypium_raimondiiKJB3589554.365148.8095
g05185arabidopsis_hallerig05185.t169.294656.4315brachypodium_distachyonKQJ9676158.802847.8873
g05185arabidopsis_hallerig05185.t151.867237.7593homo_sapiensENSP0000036815252.52138.2353
g05185arabidopsis_hallerig05185.t163.900453.9419fraxinus_excelsiorFRAEX38873_v2_000389080.2.cds62.348252.6316
g05185arabidopsis_hallerig05185.t172.614158.9212oryza_glumipatulaOGLUM10G10120.161.619750
g05185arabidopsis_hallerig05185.t171.784257.2614eragrostis_curvulaTVU3110834.530927.5449
g05185arabidopsis_hallerig05185.t172.199258.5062oryza_indicaBGIOSGA031904-PA61.267649.6479
g05185arabidopsis_hallerig05185.t174.273963.4855vitis_viniferaVitvi18g01765_P00168.320658.3969
g05185arabidopsis_hallerig05185.t172.199259.751coffea_canephoraCDP0929364.444453.3333
g05185arabidopsis_hallerig05185.t171.784258.9212ipomoea_trilobaitb04g22410.t164.79453.1835
g05185arabidopsis_hallerig05185.t171.369357.6763triticum_urartuTuG1812G0300001086.01.T0160.563448.9437
g05185arabidopsis_hallerig05185.t172.199258.9212oryza_meridionalisOMERI10G07610.161.267650
g05185arabidopsis_hallerig05185.t172.199261.8257prunus_aviumPav_sc0000659.1_g610.1.mk:mrna65.413556.015
g05185arabidopsis_hallerig05185.t164.315454.3568oryza_sativaOs10t0420000-0165.67855.5085
g05185arabidopsis_hallerig05185.t174.273963.0705pistacia_veracds-EVM0000303.167.293257.1429
g05185arabidopsis_hallerig05185.t174.688863.0705pistacia_veracds-EVM0004003.167.924557.3585
g05185arabidopsis_hallerig05185.t146.058136.0996pistacia_veracds-EVM0025449.157.216544.8454
g05185arabidopsis_hallerig05185.t174.273962.6556quercus_subercds-POE95695.133.7128.4369
g05185arabidopsis_hallerig05185.t149.792537.3444galdieria_sulphurariaEME3084344.776133.5821
g05185arabidopsis_hallerig05185.t139.419127.8008ciona_savignyiENSCSAVP0000001038148.223434.0102
g05185arabidopsis_hallerig05185.t168.879759.3361chenopodium_quinoaAUR62000916-RA:cds64.092755.2124
g05185arabidopsis_hallerig05185.t160.16648.9627dioscorea_rotundataDRNTG_07210.163.318851.5284
g05185arabidopsis_hallerig05185.t171.784259.3361dioscorea_rotundataDRNTG_03294.161.785751.0714
g05185arabidopsis_hallerig05185.t171.369358.5062dioscorea_rotundataDRNTG_03821.161.428650.3571
g05185arabidopsis_hallerig05185.t157.261449.7925citrus_clementinaESR3717270.769261.5385
g05185arabidopsis_hallerig05185.t175.103766.805juglans_regiacds.Jr01_31120_p169.08461.4504
g05185arabidopsis_hallerig05185.t136.929522.4066ostreococcus_lucimarinusABO9996042.995226.087
g05185arabidopsis_hallerig05185.t147.717840.6639actinidia_chinensisPSR8693363.535954.1436
g05185arabidopsis_hallerig05185.t168.464754.7718leersia_perrieriLPERR10G07430.147.277937.8223
g05185arabidopsis_hallerig05185.t170.539457.2614aegilops_tauschiiAET3Gv20211200.157.432446.6216
g05185arabidopsis_hallerig05185.t171.784259.3361musa_acuminataMa09_p16950.161.785751.0714
g05185arabidopsis_hallerig05185.t160.16649.7925selaginella_moellendorffiiEFJ2595262.770651.9481
g05185arabidopsis_hallerig05185.t159.75150.2075selaginella_moellendorffiiEFJ0553162.882152.8384
g05185arabidopsis_hallerig05185.t171.784256.0166panicum_halliiPUZ3898260.489547.2028
g05185arabidopsis_hallerig05185.t194.190988.7967arabis_alpinaKFK2866742.749540.3013
g05185arabidopsis_hallerig05185.t174.688865.1452quercus_lobataQL04p043008:mrna66.420757.9336
g05185arabidopsis_hallerig05185.t194.190989.6266eutrema_salsugineumESQ5532992.276487.8049
g05185arabidopsis_hallerig05185.t171.784258.0913kalanchoe_fedtschenkoiKaladp0064s0130.1.v1.166.030553.4351
g05185arabidopsis_hallerig05185.t169.294656.8465hordeum_vulgareHORVU.MOREX.r3.3HG0234740.158.596548.0702
g05185arabidopsis_hallerig05185.t173.02962.6556rosa_chinensisPRQ3582566.165456.7669
g05185arabidopsis_hallerig05185.t173.02959.3361oryza_barthiiOBART10G10220.161.971850.3521
g05185arabidopsis_hallerig05185.t147.717829.4606chara_brauniiGBG8749122.504913.8943
g05185arabidopsis_hallerig05185.t171.369359.751corymbia_citriodoracds-KAF8035336.162.093951.9856
g05185arabidopsis_hallerig05185.t170.124559.751olea_europaeaOE9A051199C562.825353.5316
g05185arabidopsis_hallerig05185.t163.070553.527eucalyptus_grandisKCW5229862.809953.3058
g05185arabidopsis_hallerig05185.t145.228223.6515cyanidioschyzon_merolaeCML266CT45.991624.0506
g05185arabidopsis_hallerig05185.t195.850690.8714camelina_sativaCsa11g025880.196.2591.25
g05185arabidopsis_hallerig05185.t195.020789.6266camelina_sativaCsa12g038950.195.020789.6266
g05185arabidopsis_hallerig05185.t170.539459.3361daucus_carotaKZM8430964.638854.3726
g05185arabidopsis_hallerig05185.t136.514526.556digitaria_exilisDexi9A01G0023050.1:cds54.32139.5062
g05185arabidopsis_hallerig05185.t139.419129.0456digitaria_exilisDexi9B01G0022500.1:cds54.597740.2299
g05185arabidopsis_hallerig05185.t159.75145.2282eragrostis_tefEt_1A_006109.CDS55.598542.0849
g05185arabidopsis_hallerig05185.t170.954456.4315eragrostis_tefEt_1B_011003.CDS6047.7193
g05185arabidopsis_hallerig05185.t171.369357.2614triticum_dicoccoidesTRIDC3AG011780.351.807241.5663
g05185arabidopsis_hallerig05185.t198.340297.9253arabidopsis_lyratafgenesh1_pm.C_scaffold_700176398.340297.9253
g05185arabidopsis_hallerig05185.t165.145251.8672saccharum_spontaneumSspon.01G0018240-1A-mRNA-1:cds56.678745.1264
g05185arabidopsis_hallerig05185.t132.780127.8008nymphaea_colorataNC1G0065350.1:cds73.148162.037
g05185arabidopsis_hallerig05185.t152.697138.5892echinochloa_crusgalliscaffold57.303.cds44.876332.8622
g05185arabidopsis_hallerig05185.t168.879752.2822echinochloa_crusgalliscaffold19.838.cds56.849343.1507
g05185arabidopsis_hallerig05185.t169.294652.6971echinochloa_crusgalliscaffold192.88.cds31.39123.8722
g05185arabidopsis_hallerig05185.t151.867243.1535corchorus_capsularisOMO5464572.254360.1156
g05185arabidopsis_hallerig05185.t172.199258.5062oryza_nivaraONIVA10G09620.161.267649.6479
g05185arabidopsis_hallerig05185.t173.44463.0705trifolium_pratenseTp57577_TGAC_v2_mRNA599966.541457.1429
g05185arabidopsis_hallerig05185.t170.124560.166cynara_cardunculusKVI0027468.145258.4677

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression