Description

Ensembl ID g04904 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 1825 bases Strand Plus strand
Position FJVB01000008.1 : 1198565 - 1200389 RNA binding domain 2OG-FeII_Oxy_2
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g04904 2OG-FeII_Oxy_2 PF13532 4e-40 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g04904.t1 1251 347aa g04904.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g04904arabidopsis_hallerig06835.t122.413814.2241arabidopsis_hallerig04904.t129.971219.0202

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g04904arabidopsis_hallerig04904.t153.025935.1585chlamydomonas_reinhardtiiPNW8230932.974921.8638
g04904arabidopsis_hallerig04904.t176.657165.4179papaver_somniferumRZC6022673.480762.7072
g04904arabidopsis_hallerig04904.t175.504365.1297papaver_somniferumRZC5972272.375762.4309
g04904arabidopsis_hallerig04904.t179.827169.1643cannabis_sativa_femalecds.evm.model.04.53278.248667.7966
g04904arabidopsis_hallerig04904.t166.858849.2795physcomitrium_patensPp3c15_20640V3.353.953539.7674
g04904arabidopsis_hallerig04904.t179.827170.6052ficus_caricaFCD_00002543-RA:cds78.248669.209
g04904arabidopsis_hallerig04904.t177.809866.5706beta_vulgarisKMT0745977.142966
g04904arabidopsis_hallerig04904.t180.979869.7406citrullus_lanatusCla97C11G219550.169.554559.901
g04904arabidopsis_hallerig04904.t181.26869.4524cucumis_sativusKGN5166977.68666.3912
g04904arabidopsis_hallerig04904.t180.691670.6052theobroma_cacaoEOX9984477.562367.867
g04904arabidopsis_hallerig04904.t196.253691.9308arabidopsis_thalianaAT1G11780.196.811692.4638
g04904arabidopsis_hallerig04904.t181.844470.0288cucumis_meloMELO3C011863.2.178.236966.9421
g04904arabidopsis_hallerig04904.t179.538970.6052populus_trichocarpaPotri.003G171900.1.v4.177.310968.6274
g04904arabidopsis_hallerig04904.t189.913585.3026brassica_napusCDY3482890.962186.2974
g04904arabidopsis_hallerig04904.t192.21986.4553brassica_napusCDY3462693.023387.2093
g04904arabidopsis_hallerig04904.t182.132671.7579malus_domestica_goldenmRNA:MD13G010640075.197965.6992
g04904arabidopsis_hallerig04904.t167.14753.0259marchantia_polymorphaPTQ4106456.280244.4444
g04904arabidopsis_hallerig04904.t181.26870.6052prunus_dulcisVVA2001378.551568.2451
g04904arabidopsis_hallerig04904.t181.26870.6052prunus_persicaONI2999378.551568.2451
g04904arabidopsis_hallerig04904.t181.26867.7233cajanus_cajanC.cajan_19310.t81.739168.1159
g04904arabidopsis_hallerig04904.t182.420768.0115glycine_maxKRH3148679.888365.9218
g04904arabidopsis_hallerig04904.t182.420768.8761glycine_maxKRG9741179.888366.7598
g04904arabidopsis_hallerig04904.t178.09865.4179lupinus_angustifoliusOIV9846743.639336.5539
g04904arabidopsis_hallerig04904.t178.674467.147medicago_truncatulaAES7203076.044664.9025
g04904arabidopsis_hallerig04904.t182.132668.2997phaseolus_vulgarisESW3576079.608966.2011
g04904arabidopsis_hallerig04904.t179.538966.2824pisum_sativumPsat5g096400.1.cds77.09564.2458
g04904arabidopsis_hallerig04904.t176.945264.8415vigna_radiataVradi02g11810.180.180267.5676
g04904arabidopsis_hallerig04904.t182.132668.8761vigna_unguiculataVigun01g247600.1.v1.279.608966.7598
g04904arabidopsis_hallerig04904.t181.26868.0115vigna_angularisKOM2545178.77165.9218
g04904arabidopsis_hallerig04904.t179.538966.2824manihot_esculentaOAY3235476.880264.0668
g04904arabidopsis_hallerig04904.t178.962564.2651capsicum_annuumPHT8170777.183162.8169
g04904arabidopsis_hallerig04904.t179.250765.9942solanum_lycopersicumSolyc04g045590.3.177.683664.6893
g04904arabidopsis_hallerig04904.t180.403568.2997sesamum_indicumSIN_1026489.t77.715966.0167
g04904arabidopsis_hallerig04904.t181.556267.7233helianthus_annuusmRNA:HanXRQr2_Chr08g031954178.830165.4596
g04904arabidopsis_hallerig04904.t179.538965.1297lactuca_sativacds-PLY69567.177.746563.662
g04904arabidopsis_hallerig04904.t171.469758.5014lolium_perennecds.KYUSt_chr3.180267.02754.8649
g04904arabidopsis_hallerig04904.t171.469759.0778avena_sativa_ot3098cds.AVESA.00001b.r3.1Cg0000195.168.319656.4738
g04904arabidopsis_hallerig04904.t171.469758.5014avena_sativa_ot3098cds.AVESA.00001b.r3.3Cg0000283.363.265351.7857
g04904arabidopsis_hallerig04904.t171.181658.5014avena_sativa_ot3098cds.AVESA.00001b.r3.3Ag0000350.164.322952.8646
g04904arabidopsis_hallerig04904.t160.230549.2795avena_sativa_sangAVESA.00010b.r2.3CG0458240.2.CDS61.290350.1466
g04904arabidopsis_hallerig04904.t171.469758.5014avena_sativa_sangAVESA.00010b.r2.3CG0458210.1.CDS68.319655.9229
g04904arabidopsis_hallerig04904.t170.893458.5014avena_sativa_sangAVESA.00010b.r2.3AG0411080.1.CDS67.768655.9229
g04904arabidopsis_hallerig04904.t170.31758.2133avena_sativa_sangAVESA.00010b.r2.1CG0116590.1.CDS67.217655.6474
g04904arabidopsis_hallerig04904.t155.043246.9741oryza_longistaminataKN539714.1_FGP00263.24553.9735
g04904arabidopsis_hallerig04904.t171.469759.9424oryza_rufipogonORUFI11G14650.167.574956.6758
g04904arabidopsis_hallerig04904.t169.164357.9251oryza_brachyanthaOB11G20900.165.934155.2198
g04904arabidopsis_hallerig04904.t173.198861.0951oryza_punctataOPUNC11G11580.169.209857.7657
g04904arabidopsis_hallerig04904.t163.400653.0259oryza_glaberrimaORGLA11G0117500.167.484756.4417
g04904arabidopsis_hallerig04904.t170.028858.2133secale_cerealeSECCEUnv1G0531470.166.212555.0409
g04904arabidopsis_hallerig04904.t169.740657.9251secale_cerealeSECCEUnv1G0531520.165.940154.7684
g04904arabidopsis_hallerig04904.t130.259425.6484secale_cerealeSECCEUnv1G0569760.178.947466.9173
g04904arabidopsis_hallerig04904.t173.198860.8069setaria_viridisTKW0069969.780257.967
g04904arabidopsis_hallerig04904.t172.622559.6542sorghum_bicolorEES0973169.613357.1823
g04904arabidopsis_hallerig04904.t173.198860.8069setaria_italicaKQK9460369.780257.967
g04904arabidopsis_hallerig04904.t170.893459.0778triticum_aestivumTraesCS3D02G017600.166.486555.4054
g04904arabidopsis_hallerig04904.t170.605259.366triticum_aestivumTraesCS3A02G028300.166.757556.1308
g04904arabidopsis_hallerig04904.t170.028858.7896triticum_aestivumTraesCS3B02G018500.166.575355.8904
g04904arabidopsis_hallerig04904.t173.48759.366zea_maysZm00001eb169540_P00169.672156.2842
g04904arabidopsis_hallerig04904.t173.775260.8069ananas_comosusAco016068.1.mrna169.565257.337
g04904arabidopsis_hallerig04904.t173.775260.8069ananas_comosusAco028307.1.mrna169.565257.337
g04904arabidopsis_hallerig04904.t173.775259.366asparagus_officinalisONK5847970.523456.7493
g04904arabidopsis_hallerig04904.t170.605259.366triticum_turgidumTRITD3Av1G007460.266.757556.1308
g04904arabidopsis_hallerig04904.t170.028858.5014triticum_turgidumTRITD3Bv1G004590.166.758255.7692
g04904arabidopsis_hallerig04904.t140.63428.5303drosophila_melanogasterFBpp040279042.469929.8193
g04904arabidopsis_hallerig04904.t166.570656.7723amborella_trichopodaERN0992269.788559.5166
g04904arabidopsis_hallerig04904.t181.844469.1643corylus_avellanaCav04g25360.t178.670466.482
g04904arabidopsis_hallerig04904.t179.827170.0288gossypium_raimondiiKJB7807676.944467.5
g04904arabidopsis_hallerig04904.t170.893457.6369brachypodium_distachyonKQJ9167667.768655.0964
g04904arabidopsis_hallerig04904.t146.397728.2421homo_sapiensENSP0000021648941.388225.1928
g04904arabidopsis_hallerig04904.t177.809865.1297fraxinus_excelsiorFRAEX38873_v2_000116510.2.cds75.630263.3053
g04904arabidopsis_hallerig04904.t165.417955.0432oryza_glumipatulaOGLUM11G13310.166.374355.848
g04904arabidopsis_hallerig04904.t172.334359.6542eragrostis_curvulaTVU2541170.308157.9832
g04904arabidopsis_hallerig04904.t171.757960.2305oryza_indicaBGIOSGA035274-PA31.51926.4557
g04904arabidopsis_hallerig04904.t181.26870.317vitis_viniferaVitvi01g01652_P00178.333367.7778
g04904arabidopsis_hallerig04904.t179.827165.1297coffea_canephoraCDP1334277.374363.1285
g04904arabidopsis_hallerig04904.t177.521665.7061ipomoea_trilobaitb08g12530.t175.561864.0449
g04904arabidopsis_hallerig04904.t170.31759.366triticum_urartuTuG1812G0300000302.01.T0166.48556.1308
g04904arabidopsis_hallerig04904.t172.046160.2305oryza_meridionalisOMERI11G11460.266.844955.8824
g04904arabidopsis_hallerig04904.t181.26870.6052prunus_aviumPav_sc0000091.1_g440.1.mk:mrna74.015764.3045
g04904arabidopsis_hallerig04904.t162.53652.1614oryza_sativaOs11t0488500-0166.769255.6923
g04904arabidopsis_hallerig04904.t181.556271.1816pistacia_veracds-EVM0003655.178.393368.4211
g04904arabidopsis_hallerig04904.t181.844470.8934quercus_subercds-POE64743.178.670468.144
g04904arabidopsis_hallerig04904.t145.24527.9539ciona_savignyiENSCSAVP0000001982251.307231.6993
g04904arabidopsis_hallerig04904.t176.657165.7061chenopodium_quinoaAUR62005622-RA:cds75.354164.5892
g04904arabidopsis_hallerig04904.t170.893458.2133dioscorea_rotundataDRNTG_24152.170.487157.8797
g04904arabidopsis_hallerig04904.t181.26870.8934citrus_clementinaESR5126878.116368.144
g04904arabidopsis_hallerig04904.t180.979870.8934juglans_regiacds.Jr13_12510_p170.959662.1212
g04904arabidopsis_hallerig04904.t180.979870.8934juglans_regiacds.Jr13_12500_p177.839368.144
g04904arabidopsis_hallerig04904.t180.403569.4524actinidia_chinensisPSS1367977.566.9444
g04904arabidopsis_hallerig04904.t165.994254.755leersia_perrieriLPERR11G10950.157.828347.9798
g04904arabidopsis_hallerig04904.t170.605258.2133aegilops_tauschiiAET3Gv20038200.467.123355.3425
g04904arabidopsis_hallerig04904.t174.351660.2305musa_acuminataMa06_p22170.172.268958.5434
g04904arabidopsis_hallerig04904.t165.994250.7205selaginella_moellendorffiiEFJ1788166.959151.462
g04904arabidopsis_hallerig04904.t165.706150.7205selaginella_moellendorffiiEFJ1641066.666751.462
g04904arabidopsis_hallerig04904.t172.334359.9424panicum_halliiPUZ4489669.33757.4586
g04904arabidopsis_hallerig04904.t190.489985.0144arabis_alpinaKFK4345189.971384.5272
g04904arabidopsis_hallerig04904.t182.420771.4697quercus_lobataQL03p052624:mrna79.224468.6981
g04904arabidopsis_hallerig04904.t193.371887.8963eutrema_salsugineumESQ3566492.045586.6477
g04904arabidopsis_hallerig04904.t177.521666.2824kalanchoe_fedtschenkoiKaladp0048s0180.1.v1.174.722263.8889
g04904arabidopsis_hallerig04904.t170.893459.0778hordeum_vulgareHORVU.MOREX.r3.3HG0223990.166.486555.4054
g04904arabidopsis_hallerig04904.t180.979870.6052rosa_chinensisPRQ3989578.711568.6274
g04904arabidopsis_hallerig04904.t172.334360.8069oryza_barthiiOBART11G13650.168.392457.4932
g04904arabidopsis_hallerig04904.t165.129750.1441chara_brauniiGBG5931822.135217.0421
g04904arabidopsis_hallerig04904.t148.41537.464corymbia_citriodoracds-KAF8018420.172.413856.0345
g04904arabidopsis_hallerig04904.t190.778186.1671brassica_rapa_ro18A09p078220.1_BraROA.192.920488.2006
g04904arabidopsis_hallerig04904.t179.538965.4179olea_europaeaOE9A066102C377.310963.5854
g04904arabidopsis_hallerig04904.t178.674466.2824eucalyptus_grandisKCW6194178.448366.092
g04904arabidopsis_hallerig04904.t191.930887.0317camelina_sativaCsa17g015880.192.463887.5362
g04904arabidopsis_hallerig04904.t192.21986.1671camelina_sativaCsa14g014610.192.21986.1671
g04904arabidopsis_hallerig04904.t190.778187.3199camelina_sativaCsa03g015480.190.257986.8195
g04904arabidopsis_hallerig04904.t140.63431.1239daucus_carotaKZM8363669.117652.9412
g04904arabidopsis_hallerig04904.t172.046159.9424eragrostis_tefEt_6A_046464.CDS64.935154.026
g04904arabidopsis_hallerig04904.t172.622559.366eragrostis_tefEt_6B_048549.CDS65.454553.5065
g04904arabidopsis_hallerig04904.t169.740658.2133triticum_dicoccoidesTRIDC3BG003030.466.483555.4945
g04904arabidopsis_hallerig04904.t165.994255.3314triticum_dicoccoidesTRIDC3AG000190.262.739752.6027
g04904arabidopsis_hallerig04904.t196.541895.6772arabidopsis_lyratascaffold_101287.197.101496.2319
g04904arabidopsis_hallerig04904.t149.855940.3458saccharum_spontaneumSspon.06G0014200-3C-mRNA-1:cds64.552252.2388
g04904arabidopsis_hallerig04904.t137.46429.3948saccharum_spontaneumSspon.06G0014200-2B-mRNA-1:cds35.230427.6423
g04904arabidopsis_hallerig04904.t169.740657.9251nymphaea_colorataNC7G0235170.1:cds68.16956.6197
g04904arabidopsis_hallerig04904.t172.910760.2305echinochloa_crusgalliscaffold91.100.cds69.315157.2603
g04904arabidopsis_hallerig04904.t172.046160.5187echinochloa_crusgalliscaffold244.77.cds68.493157.5342
g04904arabidopsis_hallerig04904.t173.198860.8069echinochloa_crusgalliscaffold73.181.cds69.972558.1267
g04904arabidopsis_hallerig04904.t172.334360.5187echinochloa_crusgalliscaffold60.484.cds68.767157.5342
g04904arabidopsis_hallerig04904.t191.642786.4553brassica_oleraceaBo8g108690.192.711487.4636
g04904arabidopsis_hallerig04904.t180.115371.1816corchorus_capsularisOMO6048177.222268.6111
g04904arabidopsis_hallerig04904.t171.757960.2305oryza_nivaraONIVA11G12950.167.66356.7935
g04904arabidopsis_hallerig04904.t178.386265.7061trifolium_pratenseTp57577_TGAC_v2_mRNA1840875.977763.6871
g04904arabidopsis_hallerig04904.t180.691667.7233cynara_cardunculusKVI0575877.994465.4596

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression