Description

Ensembl ID g03352 Gene ID Accession -
Symbol Alias - Full Name PIN domain-like family protein
Status Confidence Length 1745 bases Strand Minus strand
Position FJVB01000005.1 : 1274842 - 1276586 RNA binding domain Fcf1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g03352 Fcf1 PF04900 4.8e-23 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g03352.t1 1012 285aa g03352.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g03352arabidopsis_hallerig12905.t131.355917.7966arabidopsis_hallerig03352.t112.98257.36842
g03352arabidopsis_hallerig09709.t143.478325.2174arabidopsis_hallerig03352.t117.543910.1754
g03352arabidopsis_hallerig09706.t137.244920.9184arabidopsis_hallerig03352.t125.61414.386
g03352arabidopsis_hallerig08088.t137.244920.9184arabidopsis_hallerig03352.t125.61414.386

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g03352arabidopsis_hallerig03352.t141.403525.2632chondrus_crispusCDF4049324.2314.7844
g03352arabidopsis_hallerig03352.t150.526334.0351chlamydomonas_reinhardtiiPNW7690540.67827.4011
g03352arabidopsis_hallerig03352.t159.298246.6667papaver_somniferumRZC6250061.904848.7179
g03352arabidopsis_hallerig03352.t158.947446.6667papaver_somniferumRZC6897161.764748.8971
g03352arabidopsis_hallerig03352.t158.245644.2105cannabis_sativa_femalecds.evm.model.06.130862.172347.191
g03352arabidopsis_hallerig03352.t156.140437.8947physcomitrium_patensPp3c2_27880V3.154.237336.6102
g03352arabidopsis_hallerig03352.t162.105344.5614ficus_caricaFCD_00001908-RA:cds64.598546.3504
g03352arabidopsis_hallerig03352.t160.350941.7544beta_vulgarisKMT0756260.350941.7544
g03352arabidopsis_hallerig03352.t151.929835.7895cucumis_sativusKGN5113662.447343.038
g03352arabidopsis_hallerig03352.t164.210547.3684theobroma_cacaoEOY0297262.671246.2329
g03352arabidopsis_hallerig03352.t195.789590.8772arabidopsis_thalianaAT2G34570.197.15392.1708
g03352arabidopsis_hallerig03352.t164.210545.9649cucumis_meloMELO3C005096.2.165.591446.9534
g03352arabidopsis_hallerig03352.t167.017552.6316populus_trichocarpaPotri.004G197200.1.v4.167.491253.0035
g03352arabidopsis_hallerig03352.t146.666734.0351populus_trichocarpaPotri.009G159400.1.v4.171.891952.4324
g03352arabidopsis_hallerig03352.t182.105371.9298brassica_junceacds.BjuA05g09290S90.347579.1506
g03352arabidopsis_hallerig03352.t188.070276.8421brassica_napusCDX7956788.692677.3852
g03352arabidopsis_hallerig03352.t177.543967.3684brassica_napusCDY1726185.992274.7082
g03352arabidopsis_hallerig03352.t152.631640malus_domestica_goldenmRNA:MD08G014970063.291148.1013
g03352arabidopsis_hallerig03352.t140.350929.4737malus_domestica_goldenCDS:MD16G0210800.167.251549.1228
g03352arabidopsis_hallerig03352.t142.456131.5789malus_domestica_goldenmRNA:MD09G022700057.34642.654
g03352arabidopsis_hallerig03352.t151.578935.0877marchantia_polymorphaPTQ4799152.313235.5872
g03352arabidopsis_hallerig03352.t162.105344.5614prunus_dulcisVVA2997761.672544.2509
g03352arabidopsis_hallerig03352.t162.456145.2632prunus_persicaONI0580562.020944.9477
g03352arabidopsis_hallerig03352.t16044.2105cajanus_cajanC.cajan_10013.t66.023248.6486
g03352arabidopsis_hallerig03352.t165.263248.4211glycine_maxKRH7341165.263248.4211
g03352arabidopsis_hallerig03352.t167.017548.0702lupinus_angustifoliusOIW0202466.550547.7352
g03352arabidopsis_hallerig03352.t165.964948.4211medicago_truncatulaAES6764265.051947.7509
g03352arabidopsis_hallerig03352.t165.964947.0175medicago_truncatulaAES9867165.051946.3668
g03352arabidopsis_hallerig03352.t158.947441.7544phaseolus_vulgarisESW2250561.090943.2727
g03352arabidopsis_hallerig03352.t166.315847.0175pisum_sativumPsat2g056880.1.cds66.315847.0175
g03352arabidopsis_hallerig03352.t165.61447.7193vigna_radiataVradi03g09860.165.61447.7193
g03352arabidopsis_hallerig03352.t150.526337.193vigna_unguiculataVigun04g110000.1.v1.270.588251.9608
g03352arabidopsis_hallerig03352.t164.561445.9649vigna_angularisKOM4019164.788746.1268
g03352arabidopsis_hallerig03352.t166.666748.0702manihot_esculentaOAY3758767.375948.5816
g03352arabidopsis_hallerig03352.t166.666749.8246capsicum_annuumPHT9601567.615750.5338
g03352arabidopsis_hallerig03352.t169.473750.5263solanum_tuberosumPGSC0003DMT40001480769.718350.7042
g03352arabidopsis_hallerig03352.t167.017549.1228solanum_lycopersicumSolyc08g008040.3.167.491249.47
g03352arabidopsis_hallerig03352.t159.649139.6491lolium_perennecds.KYUSt_scaffold_1700.36865.384643.4615
g03352arabidopsis_hallerig03352.t16040.7018avena_sativa_ot3098cds.AVESA.00001b.r3.7Dg0001463.156.435638.2838
g03352arabidopsis_hallerig03352.t16040.7018avena_sativa_sangAVESA.00010b.r2.7DG1370140.1.CDS65.769244.6154
g03352arabidopsis_hallerig03352.t158.947440.3509avena_sativa_sangAVESA.00010b.r2.7CG0666210.1.CDS67.246
g03352arabidopsis_hallerig03352.t16041.0526avena_sativa_sangAVESA.00010b.r2.7AG1239290.1.CDS65.769245
g03352arabidopsis_hallerig03352.t159.298241.0526oryza_longistaminataKN540899.1_FGP00453.993637.3802
g03352arabidopsis_hallerig03352.t156.842139.2982oryza_rufipogonORUFI02G16750.162.790743.4109
g03352arabidopsis_hallerig03352.t158.947439.6491oryza_brachyanthaOB02G24420.154.90236.9281
g03352arabidopsis_hallerig03352.t160.701840.3509secale_cerealeSECCEUnv1G0561910.166.538544.2308
g03352arabidopsis_hallerig03352.t161.403542.807setaria_viridisTKW3431560.763942.3611
g03352arabidopsis_hallerig03352.t158.947442.1053sorghum_bicolorEER9925560.869643.4783
g03352arabidopsis_hallerig03352.t161.403542.807setaria_italicaKQL2546963.176944.0433
g03352arabidopsis_hallerig03352.t161.052640.7018triticum_aestivumTraesCS5A02G071500.167.441944.9612
g03352arabidopsis_hallerig03352.t155.438637.8947triticum_aestivumTraesCS6D02G395100.166.666745.5696
g03352arabidopsis_hallerig03352.t160.701839.6491triticum_aestivumTraesCS5B02G077600.166.538543.4615
g03352arabidopsis_hallerig03352.t160.701840.3509triticum_aestivumTraesCS5D02G083900.262.909141.8182
g03352arabidopsis_hallerig03352.t157.894740zea_maysZm00001eb319780_P00257.291739.5833
g03352arabidopsis_hallerig03352.t158.596542.4561ananas_comosusAco009280.1.mrna160.727344
g03352arabidopsis_hallerig03352.t162.456144.2105asparagus_officinalisONK6403163.120644.6809
g03352arabidopsis_hallerig03352.t153.684235.7895triticum_turgidumTRITD6Av1G224400.163.7542.5
g03352arabidopsis_hallerig03352.t159.649137.8947triticum_turgidumTRITD5Bv1G033920.151.515232.7273
g03352arabidopsis_hallerig03352.t158.947437.8947triticum_turgidumTRITD5Av1G036540.145.776629.4278
g03352arabidopsis_hallerig03352.t136.842123.5088caenorhabditis_elegansC34E10.10.145.258628.8793
g03352arabidopsis_hallerig03352.t135.087721.4035drosophila_melanogasterFBpp030572340.983625
g03352arabidopsis_hallerig03352.t156.140438.2456amborella_trichopodaERN1992257.55439.2086
g03352arabidopsis_hallerig03352.t164.210549.8246gossypium_raimondiiKJB4066164.664350.1767
g03352arabidopsis_hallerig03352.t161.052640brachypodium_distachyonKQK0156267.704344.358
g03352arabidopsis_hallerig03352.t144.210527.7193homo_sapiensENSP0000030833250.602431.7269
g03352arabidopsis_hallerig03352.t139.649129.1228fraxinus_excelsiorFRAEX38873_v2_000272180.1.cds59.473743.6842
g03352arabidopsis_hallerig03352.t164.210547.0175fraxinus_excelsiorFRAEX38873_v2_000360750.2.cds64.893647.5177
g03352arabidopsis_hallerig03352.t163.859647.7193fraxinus_excelsiorFRAEX38873_v2_000044110.1.cds64.53948.227
g03352arabidopsis_hallerig03352.t156.491238.9474oryza_glumipatulaOGLUM02G16310.143.869230.2452
g03352arabidopsis_hallerig03352.t150.526333.3333eragrostis_curvulaTVU0180254.752936.1217
g03352arabidopsis_hallerig03352.t158.596539.6491eragrostis_curvulaTVU2760860.507240.942
g03352arabidopsis_hallerig03352.t158.947441.0526oryza_indicaBGIOSGA006501-PA53.674137.3802
g03352arabidopsis_hallerig03352.t164.210549.4737vitis_viniferaVitvi14g01451_P00164.436649.6479
g03352arabidopsis_hallerig03352.t138.947428.7719coffea_canephoraCDP2146264.912347.9532
g03352arabidopsis_hallerig03352.t128.421122.1053coffea_canephoraCDP2157665.853751.2195
g03352arabidopsis_hallerig03352.t158.245643.8596coffea_canephoraCDP2111862.172346.8165
g03352arabidopsis_hallerig03352.t164.561447.0175coffea_canephoraCDP0290465.017747.3498
g03352arabidopsis_hallerig03352.t161.052640.7018triticum_urartuTuG1812G0500000803.01.T0167.441944.9612
g03352arabidopsis_hallerig03352.t157.894738.9474oryza_meridionalisOMERI02G15830.158.098639.0845
g03352arabidopsis_hallerig03352.t162.80745.9649prunus_aviumPav_sc0001911.1_g370.1.mk:mrna62.369345.6446
g03352arabidopsis_hallerig03352.t159.298241.4035oryza_sativaOs02t0468200-0161.010842.5993
g03352arabidopsis_hallerig03352.t167.719351.5789pistacia_veracds-EVM0004350.267.719351.5789
g03352arabidopsis_hallerig03352.t165.964947.0175quercus_subercds-POF26565.159.493742.4051
g03352arabidopsis_hallerig03352.t138.245622.1053ciona_savignyiENSCSAVP0000000547749.545528.6364
g03352arabidopsis_hallerig03352.t150.175434.0351chenopodium_quinoaAUR62037816-RA:cds61.373441.6309
g03352arabidopsis_hallerig03352.t161.052643.5088chenopodium_quinoaAUR62009346-RA:cds37.419426.6667
g03352arabidopsis_hallerig03352.t159.649140.3509dioscorea_rotundataDRNTG_22521.160.714341.0714
g03352arabidopsis_hallerig03352.t165.263251.2281citrus_clementinaESR6015265.263251.2281
g03352arabidopsis_hallerig03352.t141.754425.2632ostreococcus_lucimarinusABO9563848.971229.6296
g03352arabidopsis_hallerig03352.t14022.4561saccharomyces_cerevisiaeYOR004W44.881925.1968
g03352arabidopsis_hallerig03352.t166.666748.0702actinidia_chinensisPSS3533366.901448.2394
g03352arabidopsis_hallerig03352.t159.298239.2982leersia_perrieriLPERR02G13050.155.048936.4821
g03352arabidopsis_hallerig03352.t160.350938.5965aegilops_tauschiiAET5Gv20205400.560.992939.0071
g03352arabidopsis_hallerig03352.t134.736821.0526aegilops_tauschiiAET6Gv20993300.171.22343.1655
g03352arabidopsis_hallerig03352.t161.052645.9649musa_acuminataMa07_p04390.164.925448.8806
g03352arabidopsis_hallerig03352.t150.175436.8421selaginella_moellendorffiiEFJ1654362.445445.8515
g03352arabidopsis_hallerig03352.t150.526336.4912selaginella_moellendorffiiEFJ3225562.06944.8276
g03352arabidopsis_hallerig03352.t161.403543.1579panicum_halliiPUZ7171063.176944.4043
g03352arabidopsis_hallerig03352.t137.894733.6842arabis_alpinaKFK3684887.096877.4194
g03352arabidopsis_hallerig03352.t165.964947.3684quercus_lobataQL02p069234:mrna64.383646.2329
g03352arabidopsis_hallerig03352.t190.175481.7544eutrema_salsugineumESQ5205690.175481.7544
g03352arabidopsis_hallerig03352.t162.80747.0175kalanchoe_fedtschenkoiKaladp0018s0014.1.v1.155.590141.6149
g03352arabidopsis_hallerig03352.t160.701840.7018hordeum_vulgareHORVU.MOREX.r3.5HG0439110.166.538544.6154
g03352arabidopsis_hallerig03352.t155.789535.4386hordeum_vulgareHORVU.MOREX.r3.6HG0632710.163.346640.239
g03352arabidopsis_hallerig03352.t165.964950.1754rosa_chinensisPRQ2403766.666750.7092
g03352arabidopsis_hallerig03352.t156.842139.2982oryza_barthiiOBART02G16270.162.790743.4109
g03352arabidopsis_hallerig03352.t153.333333.3333chara_brauniiGBG7104740.970425.6065
g03352arabidopsis_hallerig03352.t166.315848.0702corymbia_citriodoracds-KAF8013064.166.315848.0702
g03352arabidopsis_hallerig03352.t189.473778.2456brassica_rapa_ro18A03p019730.1_BraROA.190.10678.7986
g03352arabidopsis_hallerig03352.t152.982538.5965olea_europaeaOE9A100088C250.841837.037
g03352arabidopsis_hallerig03352.t164.912347.3684olea_europaeaOE9A056517C164.685347.2028
g03352arabidopsis_hallerig03352.t195.087784.9123camelina_sativaCsa05g020700.195.087784.9123
g03352arabidopsis_hallerig03352.t194.736885.614camelina_sativaCsa06g037020.194.736885.614
g03352arabidopsis_hallerig03352.t164.912344.9123daucus_carotaKZM9052321.662814.9883
g03352arabidopsis_hallerig03352.t162.105343.5088digitaria_exilisDexi2B01G0022990.1:cds63.898944.7653
g03352arabidopsis_hallerig03352.t158.596540.3509digitaria_exilisDexi2A01G0024300.1:cds61.397142.2794
g03352arabidopsis_hallerig03352.t158.596540eragrostis_tefEt_1A_006277.CDS60.288841.1552
g03352arabidopsis_hallerig03352.t158.596539.6491eragrostis_tefEt_1B_011284.CDS60.288840.7942
g03352arabidopsis_hallerig03352.t161.052640.7018triticum_dicoccoidesTRIDC5AG010790.16040
g03352arabidopsis_hallerig03352.t142.105326.3158triticum_dicoccoidesTRIDC6BG073150.173.619646.0123
g03352arabidopsis_hallerig03352.t160.701840triticum_dicoccoidesTRIDC5BG012710.160.701840
g03352arabidopsis_hallerig03352.t197.543995.7895arabidopsis_lyratafgenesh2_kg.4__1480__AT2G34570.198.932497.153
g03352arabidopsis_hallerig03352.t155.789539.6491saccharum_spontaneumSspon.02G0009210-4D-mRNA-1:cds63.855445.3815
g03352arabidopsis_hallerig03352.t155.438639.2982saccharum_spontaneumSspon.02G0009210-3C-mRNA-1:cds62.450644.2688
g03352arabidopsis_hallerig03352.t159.298241.7544saccharum_spontaneumSspon.02G0009210-1A-mRNA-1:cds61.231943.1159
g03352arabidopsis_hallerig03352.t151.228133.6842nymphaea_colorataNC1G0260660.1:cds55.094336.2264
g03352arabidopsis_hallerig03352.t162.456143.5088echinochloa_crusgalliscaffold29.11.cds64.259944.7653
g03352arabidopsis_hallerig03352.t162.105342.4561echinochloa_crusgalliscaffold16.541.cds65.073544.4853
g03352arabidopsis_hallerig03352.t161.754442.807echinochloa_crusgalliscaffold27.355.cds63.537944.0433
g03352arabidopsis_hallerig03352.t161.754448.0702corchorus_capsularisOMO8557061.32447.7352
g03352arabidopsis_hallerig03352.t159.298241.4035oryza_nivaraONIVA02G17530.153.993637.6997
g03352arabidopsis_hallerig03352.t168.421148.4211trifolium_pratenseTp57577_TGAC_v2_mRNA2875553.867438.1215
g03352arabidopsis_hallerig03352.t161.052643.1579cynara_cardunculusKVE3914061.921743.7722

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression