Description

Ensembl ID g03108 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 4240 bases Strand Plus strand
Position FJVB01000004.1 : 3100315 - 3104554 RNA binding domain 2OG-FeII_Oxy_2
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g03108 2OG-FeII_Oxy_2 PF13532 1.7e-11 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g03108.t1 2271 538aa g03108.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g03108arabidopsis_hallerig31367.t176.033168.595arabidopsis_hallerig03108.t134.200730.855
g03108arabidopsis_hallerig24310.t173.795264.4578arabidopsis_hallerig03108.t145.53939.777
g03108arabidopsis_hallerig24989.t168.639156.0158arabidopsis_hallerig03108.t164.68452.7881
g03108arabidopsis_hallerig11071.t187.686676.4925arabidopsis_hallerig03108.t143.680338.1041
g03108arabidopsis_hallerig10116.t127.2314.554arabidopsis_hallerig03108.t132.34217.2862
g03108arabidopsis_hallerig09513.t136.054420.6349arabidopsis_hallerig03108.t129.553916.9145
g03108arabidopsis_hallerig09047.t132.562317.7936arabidopsis_hallerig03108.t134.014918.5874

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g03108arabidopsis_hallerig03108.t132.713824.1636papaver_somniferumRZC8389245.833333.8542
g03108arabidopsis_hallerig03108.t132.899623.9777papaver_somniferumRZC8389355.312540.3125
g03108arabidopsis_hallerig03108.t142.379233.829papaver_somniferumRZC4482547.20537.6812
g03108arabidopsis_hallerig03108.t157.620846.2825papaver_somniferumRZC6664535.673228.6536
g03108arabidopsis_hallerig03108.t160.594849.6283cannabis_sativa_femalecds.evm.model.04.211246.974138.4726
g03108arabidopsis_hallerig03108.t124.349417.8439ficus_caricaFCD_00008593-RA:cds44.709932.7645
g03108arabidopsis_hallerig03108.t160.780750.1859citrullus_lanatusCla97C01G019650.136.495530.1339
g03108arabidopsis_hallerig03108.t159.479649.2565cucumis_sativusKGN4890764.128353.1062
g03108arabidopsis_hallerig03108.t160.037249.4424theobroma_cacaoEOX9086662.475851.4507
g03108arabidopsis_hallerig03108.t169.702662.6394arabidopsis_thalianaAT4G36090.372.115464.8077
g03108arabidopsis_hallerig03108.t158.736148.6989cucumis_meloMELO3C007897.2.163.252.4
g03108arabidopsis_hallerig03108.t158.178447.7695populus_trichocarpaPotri.005G114800.1.v4.161.857750.7905
g03108arabidopsis_hallerig03108.t156.877344.7955populus_trichocarpaPotri.007G012200.1.v4.159.882647.1624
g03108arabidopsis_hallerig03108.t166.17157.6208brassica_napusCDX7555176.889866.9546
g03108arabidopsis_hallerig03108.t113.568811.1524brassica_napusCDX6919667.592655.5556
g03108arabidopsis_hallerig03108.t168.587458.3643brassica_napusCDX6919776.55665.1452
g03108arabidopsis_hallerig03108.t167.100457.0632brassica_napusCDY4311574.896363.6929
g03108arabidopsis_hallerig03108.t158.178446.4684malus_domestica_goldenmRNA:MD02G011380060.541648.3559
g03108arabidopsis_hallerig03108.t160.22348.8848malus_domestica_goldenmRNA:MD15G021560063.529451.5686
g03108arabidopsis_hallerig03108.t136.80331.2268marchantia_polymorphaPTQ5055443.805337.1681
g03108arabidopsis_hallerig03108.t159.107849.2565prunus_dulcisVVA0987162.721952.2682
g03108arabidopsis_hallerig03108.t158.364348.8848prunus_persicaONH9706262.178252.0792
g03108arabidopsis_hallerig03108.t158.736148.6989cajanus_cajanC.cajan_38208.t65.833354.5833
g03108arabidopsis_hallerig03108.t157.249147.026glycine_maxKRH0532559.230848.6538
g03108arabidopsis_hallerig03108.t157.806747.9554glycine_maxKRH1571159.464649.3308
g03108arabidopsis_hallerig03108.t146.282538.6617lupinus_angustifoliusOIW1496067.115956.0647
g03108arabidopsis_hallerig03108.t159.293749.6283lupinus_angustifoliusOIW0399967.299656.3291
g03108arabidopsis_hallerig03108.t158.736147.9554medicago_truncatulaKEH3989060.420749.3308
g03108arabidopsis_hallerig03108.t157.620848.1413phaseolus_vulgarisESW3310959.50149.7121
g03108arabidopsis_hallerig03108.t156.877346.6543pisum_sativumPsat6g024280.1.cds57.518847.1805
g03108arabidopsis_hallerig03108.t157.434947.2119vigna_radiataVradi06g13130.165.052653.4737
g03108arabidopsis_hallerig03108.t157.806746.6543vigna_unguiculataVigun08g047600.1.v1.265.750553.0655
g03108arabidopsis_hallerig03108.t157.063247.5836vigna_angularisKOM4876664.767954.0084
g03108arabidopsis_hallerig03108.t159.293749.6283manihot_esculentaOAY6086163.545853.1873
g03108arabidopsis_hallerig03108.t158.364347.3978manihot_esculentaOAY5753560.50149.1329
g03108arabidopsis_hallerig03108.t118.773215.2416capsicum_annuumPHT8899662.345750.6173
g03108arabidopsis_hallerig03108.t152.602241.4498capsicum_annuumPHT9114759.578946.9474
g03108arabidopsis_hallerig03108.t148.51338.6617solanum_tuberosumPGSC0003DMT40006135438.438930.6333
g03108arabidopsis_hallerig03108.t157.434945.9108solanum_tuberosumPGSC0003DMT40000915658.192146.516
g03108arabidopsis_hallerig03108.t153.717541.6357solanum_lycopersicumSolyc02g062180.3.144.945634.8367
g03108arabidopsis_hallerig03108.t157.249145.9108solanum_lycopersicumSolyc02g083960.3.157.249145.9108
g03108arabidopsis_hallerig03108.t154.646844.9814sesamum_indicumSIN_1025331.t63.225852.043
g03108arabidopsis_hallerig03108.t158.550247.5836helianthus_annuusmRNA:HanXRQr2_Chr16g077647164.285752.2449
g03108arabidopsis_hallerig03108.t158.921948.8848lactuca_sativacds-PLY96081.158.703748.7037
g03108arabidopsis_hallerig03108.t153.159943.3086lolium_perennecds.KYUSt_chr7.3879942.750434.8281
g03108arabidopsis_hallerig03108.t153.717543.1227avena_sativa_ot3098cds.AVESA.00001b.r3.7Ag0000733.141.52333.3333
g03108arabidopsis_hallerig03108.t153.531643.1227avena_sativa_ot3098cds.AVESA.00001b.r3.7Dg0003409.441.618533.526
g03108arabidopsis_hallerig03108.t154.275143.6803avena_sativa_ot3098cds.AVESA.00001b.r3.5Cg0003212.143.387834.9183
g03108arabidopsis_hallerig03108.t154.275143.6803avena_sativa_sangAVESA.00010b.r2.5CG0864500.1.CDS44.992336.2096
g03108arabidopsis_hallerig03108.t153.717543.1227avena_sativa_sangAVESA.00010b.r2.7DG1337970.1.CDS45.015636.1371
g03108arabidopsis_hallerig03108.t153.717543.1227avena_sativa_sangAVESA.00010b.r2.7AG1202400.1.CDS44.736835.9133
g03108arabidopsis_hallerig03108.t143.308636.9888oryza_longistaminataKN538905.1_FGP01543.551437.1963
g03108arabidopsis_hallerig03108.t152.416444.7955oryza_rufipogonORUFI06G02440.145.779239.1234
g03108arabidopsis_hallerig03108.t152.230543.4944oryza_brachyanthaOB06G12310.145.691138.0488
g03108arabidopsis_hallerig03108.t152.416444.052oryza_punctataOPUNC06G02310.144.69137.5594
g03108arabidopsis_hallerig03108.t152.602244.7955oryza_glaberrimaORGLA06G0024500.145.941639.1234
g03108arabidopsis_hallerig03108.t152.788143.1227secale_cerealeSECCE4Rv1G0269920.145.732737.3591
g03108arabidopsis_hallerig03108.t152.602243.8662setaria_viridisTKW1954245.941638.3117
g03108arabidopsis_hallerig03108.t152.602242.9368sorghum_bicolorKXG1924946.317537.8069
g03108arabidopsis_hallerig03108.t152.416443.6803setaria_italicaKQL0919745.631138.0259
g03108arabidopsis_hallerig03108.t144.05235.8736triticum_aestivumTraesCS4A02G378300.148.367339.3878
g03108arabidopsis_hallerig03108.t152.97443.3086triticum_aestivumTraesCS7A02G081300.146.568638.0719
g03108arabidopsis_hallerig03108.t134.200728.4387triticum_aestivumTraesCS7D02G075200.147.058839.1304
g03108arabidopsis_hallerig03108.t151.672942.9368zea_maysZm00001eb377750_P00245.203337.561
g03108arabidopsis_hallerig03108.t154.275145.3532ananas_comosusAco018614.1.mrna154.579445.6075
g03108arabidopsis_hallerig03108.t142.750934.3866asparagus_officinalisONK8016265.155852.4079
g03108arabidopsis_hallerig03108.t152.97443.3086triticum_turgidumTRITD7Av1G023080.246.568638.0719
g03108arabidopsis_hallerig03108.t152.602242.3792triticum_turgidumTRITD4Av1G238900.146.091237.1335
g03108arabidopsis_hallerig03108.t122.304813.197amborella_trichopodaERN1078240.67824.0678
g03108arabidopsis_hallerig03108.t158.364347.7695corylus_avellanaCav02g02060.t157.933647.417
g03108arabidopsis_hallerig03108.t158.364349.6283gossypium_raimondiiKJB4334961.089551.9455
g03108arabidopsis_hallerig03108.t153.903344.4238brachypodium_distachyonKQK1993548.821540.2357
g03108arabidopsis_hallerig03108.t156.505644.9814fraxinus_excelsiorFRAEX38873_v2_000157720.1.cds60.079147.8261
g03108arabidopsis_hallerig03108.t153.159941.6357fraxinus_excelsiorFRAEX38873_v2_000042600.1.cds59.832646.8619
g03108arabidopsis_hallerig03108.t148.51340.8922oryza_glumipatulaOGLUM06G02460.142.096835.4839
g03108arabidopsis_hallerig03108.t152.416442.5651eragrostis_curvulaTVU1274247.715738.7479
g03108arabidopsis_hallerig03108.t152.416444.6097oryza_indicaBGIOSGA022263-PA4740
g03108arabidopsis_hallerig03108.t160.408949.4424vitis_viniferaVitvi04g01448_P00163.725552.1569
g03108arabidopsis_hallerig03108.t158.736146.6543nicotiana_attenuataOIT0045158.518546.4815
g03108arabidopsis_hallerig03108.t157.249146.6543coffea_canephoraCDP0190959.230848.2692
g03108arabidopsis_hallerig03108.t158.921947.9554ipomoea_trilobaitb05g24620.t160.72849.4253
g03108arabidopsis_hallerig03108.t156.505645.1673ipomoea_trilobaitb12g02930.t355.677744.5055
g03108arabidopsis_hallerig03108.t134.200728.8104triticum_urartuTuG1812S0003278000.01.T0147.058839.6419
g03108arabidopsis_hallerig03108.t152.602244.7955oryza_meridionalisOMERI06G02350.132.491427.6693
g03108arabidopsis_hallerig03108.t158.736148.6989prunus_aviumPav_sc0000044.1_g620.1.mk:mrna62.698451.9841
g03108arabidopsis_hallerig03108.t152.416444.7955oryza_sativaOs06t0138200-0145.779239.1234
g03108arabidopsis_hallerig03108.t158.550248.6989pistacia_veracds-EVM0014624.162.376251.8812
g03108arabidopsis_hallerig03108.t154.275143.8662quercus_subercds-POF19139.164.317251.9824
g03108arabidopsis_hallerig03108.t151.672942.7509quercus_subercds-POE87187.166.033354.6318
g03108arabidopsis_hallerig03108.t131.598525.8364chenopodium_quinoaAUR62043716-RA:cds74.889961.2335
g03108arabidopsis_hallerig03108.t127.509323.9777chenopodium_quinoaAUR62043238-RA:cds89.156677.7108
g03108arabidopsis_hallerig03108.t133.085526.7658chenopodium_quinoaAUR62043611-RA:cds17.571614.2152
g03108arabidopsis_hallerig03108.t155.762145.1673dioscorea_rotundataDRNTG_01859.150.761441.1168
g03108arabidopsis_hallerig03108.t158.736148.513citrus_clementinaESR3874361.359250.6796
g03108arabidopsis_hallerig03108.t155.762142.9368juglans_regiacds.Jr11_07880_p160.362246.4789
g03108arabidopsis_hallerig03108.t157.620848.3271juglans_regiacds.Jr08_17220_p157.195647.9705
g03108arabidopsis_hallerig03108.t159.479648.8848actinidia_chinensisPSS2135461.65750.6744
g03108arabidopsis_hallerig03108.t157.806746.0967actinidia_chinensisPSS3655254.181243.2056
g03108arabidopsis_hallerig03108.t153.345745.3532leersia_perrieriLPERR06G02170.145.846638.9776
g03108arabidopsis_hallerig03108.t145.53936.9888aegilops_tauschiiAET7Gv20212500.249.098239.8798
g03108arabidopsis_hallerig03108.t155.204542.7509musa_acuminataMa11_p06260.149.253738.1426
g03108arabidopsis_hallerig03108.t136.988830.2974selaginella_moellendorffiiEFJ2757864.820853.0945
g03108arabidopsis_hallerig03108.t136.988830.2974selaginella_moellendorffiiEFJ3736668.858156.4014
g03108arabidopsis_hallerig03108.t152.230543.1227panicum_halliiPUZ6228846.065638.0328
g03108arabidopsis_hallerig03108.t165.427557.4349arabis_alpinaKFK3024073.180964.2412
g03108arabidopsis_hallerig03108.t159.851348.8848quercus_lobataQL06p032625:mrna63.888952.1825
g03108arabidopsis_hallerig03108.t156.691445.539kalanchoe_fedtschenkoiKaladp0040s0535.1.v1.160.39648.5149
g03108arabidopsis_hallerig03108.t117.472115.7993kalanchoe_fedtschenkoiKaladp0016s0357.1.v1.170.676763.9098
g03108arabidopsis_hallerig03108.t151.858742.5651hordeum_vulgareHORVU.MOREX.r3.7HG0647650.145.888237.6645
g03108arabidopsis_hallerig03108.t159.293748.513rosa_chinensisPRQ4742463.419551.8887
g03108arabidopsis_hallerig03108.t149.070642.0074oryza_barthiiOBART06G02380.148.175241.2409
g03108arabidopsis_hallerig03108.t147.583634.7584chara_brauniiGBG6224416.050211.7241
g03108arabidopsis_hallerig03108.t159.479647.2119corymbia_citriodoracds-KAF8011161.162.868449.9018
g03108arabidopsis_hallerig03108.t165.055856.5056brassica_rapa_ro18A01p002810.1_BraROA.176.586466.5208
g03108arabidopsis_hallerig03108.t155.390342.0074olea_europaeaOE9A046349C159.645.2
g03108arabidopsis_hallerig03108.t157.434945.539olea_europaeaOE9A078511C161.309548.6111
g03108arabidopsis_hallerig03108.t148.698939.0335eucalyptus_grandisKCW5314265.99552.8967
g03108arabidopsis_hallerig03108.t170.817862.0818camelina_sativaCsa12g006280.176.6667.2032
g03108arabidopsis_hallerig03108.t172.304863.5688camelina_sativaCsa10g005020.178.427468.9516
g03108arabidopsis_hallerig03108.t171.933163.7546camelina_sativaCsa11g005600.171.270763.1676
g03108arabidopsis_hallerig03108.t156.877345.1673daucus_carotaKZM9113563.092850.1031
g03108arabidopsis_hallerig03108.t133.085525.8364digitaria_exilisDexi4A01G0002540.1:cds35.74327.9116
g03108arabidopsis_hallerig03108.t148.141338.6617digitaria_exilisDexi4B01G0002690.1:cds38.144330.6333
g03108arabidopsis_hallerig03108.t152.97442.9368eragrostis_tefEt_2B_019781.CDS46.79837.931
g03108arabidopsis_hallerig03108.t153.345742.7509eragrostis_tefEt_2A_015607.CDS46.742737.4593
g03108arabidopsis_hallerig03108.t152.97443.1227triticum_dicoccoidesTRIDC7AG009160.245.967737.4194
g03108arabidopsis_hallerig03108.t152.788142.3792triticum_dicoccoidesTRIDC4AG060930.346.254137.1335
g03108arabidopsis_hallerig03108.t184.386681.9703arabidopsis_lyratafgenesh2_kg.7__456__AT4G36090.392.653190
g03108arabidopsis_hallerig03108.t150.557642.0074saccharum_spontaneumSspon.08G0015910-2B-mRNA-1:cds51.127842.4812
g03108arabidopsis_hallerig03108.t142.193334.3866nymphaea_colorataNC2G0286860.1:cds52.668242.9234
g03108arabidopsis_hallerig03108.t153.159943.3086echinochloa_crusgalliscaffold34.604.cds46.504137.8862
g03108arabidopsis_hallerig03108.t152.788143.8662echinochloa_crusgalliscaffold507.16.cds46.405238.5621
g03108arabidopsis_hallerig03108.t154.275143.3086echinochloa_crusgalliscaffold10.133.cds29.554723.583
g03108arabidopsis_hallerig03108.t163.754654.2751brassica_oleraceaBo1g005950.178.132166.5148
g03108arabidopsis_hallerig03108.t160.22349.8141corchorus_capsularisOMO5705763.03552.1401
g03108arabidopsis_hallerig03108.t152.602244.7955oryza_nivaraONIVA06G02940.145.941639.1234
g03108arabidopsis_hallerig03108.t157.992647.026trifolium_pratenseTp57577_TGAC_v2_mRNA4016358.317847.2897
g03108arabidopsis_hallerig03108.t153.531644.2379cynara_cardunculusKVI0293958.299648.1781

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression