Description

Ensembl ID g00569 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 5006 bases Strand Plus strand
Position FJVB01000001.1 : 2638044 - 2643049 RNA binding domain tRNA_anti-codon , tRNA-synt_2 , GAD
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g00569 tRNA_anti-codon PF01336 3.3e-11 1
g00569 tRNA-synt_2 PF00152 8e-107 2
g00569 GAD PF02938 3.6e-23 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g00569.t1 2726 710aa g00569.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g00569arabidopsis_hallerig15570.t138.947420arabidopsis_hallerig00569.t110.42255.35211
g00569arabidopsis_hallerig05657.t138.83524.2718arabidopsis_hallerig00569.t15.63383.52113
g00569arabidopsis_hallerig05656.t131.2517.8125arabidopsis_hallerig00569.t114.08458.02817
g00569arabidopsis_hallerig05867.t133.548418.871arabidopsis_hallerig00569.t129.295816.4789
g00569arabidopsis_hallerig00874.t133.756821.4156arabidopsis_hallerig00569.t126.197216.6197
g00569arabidopsis_hallerig11406.t133.653819.6154arabidopsis_hallerig00569.t124.647914.3662
g00569arabidopsis_hallerig11824.t123.270412.2642arabidopsis_hallerig00569.t120.845110.9859
g00569arabidopsis_hallerig14753.t1.cds130.925917.037arabidopsis_hallerig00569.t123.521112.9577
g00569arabidopsis_hallerig03879.t128.683716.3065arabidopsis_hallerig00569.t120.563411.6901
g00569arabidopsis_hallerig24084.t130.069916.6084arabidopsis_hallerig00569.t124.225413.3803
g00569arabidopsis_hallerig17138.t131.393317.284arabidopsis_hallerig00569.t125.070413.8028
g00569arabidopsis_hallerig17962.t123.900313.0499arabidopsis_hallerig00569.t122.957712.5352
g00569arabidopsis_hallerig31476.t133.976821.0425arabidopsis_hallerig00569.t124.788715.3521
g00569arabidopsis_hallerig29462.t130.536919.7987arabidopsis_hallerig00569.t112.81698.30986

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g00569arabidopsis_hallerig00569.t154.50736.7606chondrus_crispusCDF3968358.814639.6657
g00569arabidopsis_hallerig00569.t161.83146.0563chlamydomonas_reinhardtiiPNW7881368.701151.1737
g00569arabidopsis_hallerig00569.t178.309967.7465papaver_somniferumRZC4915283.233572.006
g00569arabidopsis_hallerig00569.t176.33865.7747cannabis_sativa_femalecds.evm.model.01.52278.893767.9767
g00569arabidopsis_hallerig00569.t169.577555.3521physcomitrium_patensPp3c20_5000V3.171.181656.6282
g00569arabidopsis_hallerig00569.t178.309968.8732ficus_caricaFCD_00029919-RA:cds82.615272.6597
g00569arabidopsis_hallerig00569.t175.633863.9437beta_vulgarisKMS9985379.320567.0606
g00569arabidopsis_hallerig00569.t178.591669.2958citrullus_lanatusCla97C10G192990.183.283673.4328
g00569arabidopsis_hallerig00569.t178.873269.1549cucumis_sativusKGN5273383.582173.2836
g00569arabidopsis_hallerig00569.t179.436668.7324theobroma_cacaoEOX9724181.26870.317
g00569arabidopsis_hallerig00569.t192.394492.1127arabidopsis_thalianaAT4G33760.198.795298.494
g00569arabidopsis_hallerig00569.t177.887367.8873cucumis_meloMELO3C018029.2.172.85963.5046
g00569arabidopsis_hallerig00569.t179.436670.5634populus_trichocarpaPotri.001G289001.1.v4.184.557775.1124
g00569arabidopsis_hallerig00569.t178.591670.1408populus_trichocarpaPotri.009G084300.1.v4.184.036175
g00569arabidopsis_hallerig00569.t190.140883.662brassica_junceacds.BjuB03g42390S55.077551.1188
g00569arabidopsis_hallerig00569.t193.239488.8732brassica_junceacds.BjuB05g58670S64.838461.8022
g00569arabidopsis_hallerig00569.t193.521189.0141brassica_junceacds.BjuA08g14740S67.479764.2276
g00569arabidopsis_hallerig00569.t188.591685.2113brassica_napusCDX6900494.444490.8408
g00569arabidopsis_hallerig00569.t189.154985.7747brassica_napusCDY2831895.04591.4414
g00569arabidopsis_hallerig00569.t188.873285.3521brassica_napusCDX7537994.602790.8546
g00569arabidopsis_hallerig00569.t188.732485.7747brassica_napusCDY4843695.166291.994
g00569arabidopsis_hallerig00569.t179.577570.1408malus_domestica_goldenmRNA:MD10G009370084.707674.6627
g00569arabidopsis_hallerig00569.t169.154955.3521marchantia_polymorphaPTQ4255371.678857.3723
g00569arabidopsis_hallerig00569.t179.577569.1549prunus_dulcisVVA1555484.707673.6132
g00569arabidopsis_hallerig00569.t179.436669.1549prunus_persicaONH9206484.557773.6132
g00569arabidopsis_hallerig00569.t179.718369.4366cajanus_cajanC.cajan_15598.t85.369574.359
g00569arabidopsis_hallerig00569.t179.436669.7183glycine_maxKRH6038484.81274.4361
g00569arabidopsis_hallerig00569.t178.873267.6056medicago_truncatulaAES9191384.464672.3982
g00569arabidopsis_hallerig00569.t171.549359.5775medicago_truncatulaAES8829878.395165.2778
g00569arabidopsis_hallerig00569.t172.676161.4085medicago_truncatulaAES6291584.729171.5928
g00569arabidopsis_hallerig00569.t178.732467.3239medicago_truncatulaAET0537784.060271.8797
g00569arabidopsis_hallerig00569.t176.760666.9014phaseolus_vulgarisESW0394981.709171.2144
g00569arabidopsis_hallerig00569.t179.154969.5775phaseolus_vulgarisESW3239384.257974.063
g00569arabidopsis_hallerig00569.t169.295860.2817vigna_radiataVradi07g27880.182.274271.5719
g00569arabidopsis_hallerig00569.t179.718369.8592vigna_unguiculataVigun03g014700.1.v1.284.857674.3628
g00569arabidopsis_hallerig00569.t167.605658.4507vigna_angularisKOM3005083.04571.7993
g00569arabidopsis_hallerig00569.t171.408463.3803manihot_esculentaOAY4533983.525574.1351
g00569arabidopsis_hallerig00569.t177.042366.7606capsicum_annuumPHT6396881.03770.2222
g00569arabidopsis_hallerig00569.t148.591542.3944solanum_tuberosumPGSC0003DMT40001314890.078378.5901
g00569arabidopsis_hallerig00569.t178.16968.0282solanum_lycopersicumSolyc01g106740.3.182.959672.1973
g00569arabidopsis_hallerig00569.t175.211367.8873sesamum_indicumSIN_1026142.t82.407474.3827
g00569arabidopsis_hallerig00569.t178.450767.1831helianthus_annuusmRNA:HanXRQr2_Chr03g010816182.763770.8767
g00569arabidopsis_hallerig00569.t178.028266.4789helianthus_annuusmRNA:HanXRQr2_Chr16g074257173.572462.6826
g00569arabidopsis_hallerig00569.t178.309966.7606lactuca_sativacds-PLY65436.182.738170.5357
g00569arabidopsis_hallerig00569.t160.845150.8451lolium_perennecds.KYUSt_chr3.771671.880260.0666
g00569arabidopsis_hallerig00569.t169.718358.3099avena_sativa_ot3098cds.AVESA.00001b.r3.3Ag0000435.271.635359.9132
g00569arabidopsis_hallerig00569.t17058.3099avena_sativa_ot3098cds.AVESA.00001b.r3.3Cg0000374.472.02960
g00569arabidopsis_hallerig00569.t17058.4507avena_sativa_ot3098cds.AVESA.00001b.r3.1Cg0000110.171.203459.4556
g00569arabidopsis_hallerig00569.t169.859258.4507avena_sativa_sangAVESA.00010b.r2.1CG0115000.1.CDS73.699961.6642
g00569arabidopsis_hallerig00569.t169.859258.169avena_sativa_sangAVESA.00010b.r2.3CG0460140.1.CDS73.699961.367
g00569arabidopsis_hallerig00569.t169.577558.169avena_sativa_sangAVESA.00010b.r2.3AG0412920.1.CDS73.402761.367
g00569arabidopsis_hallerig00569.t163.802853.9437oryza_longistaminataKN540233.1_FGP00979.894267.5485
g00569arabidopsis_hallerig00569.t171.690160.2817oryza_rufipogonORUFI01G03610.375.407463.4074
g00569arabidopsis_hallerig00569.t147.464840.8451oryza_brachyanthaOB01G51630.185.10173.2323
g00569arabidopsis_hallerig00569.t171.549360.2817oryza_punctataOPUNC01G03150.175.259363.4074
g00569arabidopsis_hallerig00569.t171.690160.2817oryza_glaberrimaORGLA01G0030400.174.524262.6647
g00569arabidopsis_hallerig00569.t170.845159.7183secale_cerealeSECCE3Rv1G0158380.174.7463.0015
g00569arabidopsis_hallerig00569.t171.971861.2676setaria_viridisTKW3227475.480164.2541
g00569arabidopsis_hallerig00569.t159.436652.1127sorghum_bicolorKXG3184983.399273.1225
g00569arabidopsis_hallerig00569.t168.732458.169setaria_italicaKQL2385174.73263.2466
g00569arabidopsis_hallerig00569.t163.943753.2394setaria_italicaKQL0445063.496552.8671
g00569arabidopsis_hallerig00569.t170.563459.7183triticum_aestivumTraesCS3D02G089200.174.332362.908
g00569arabidopsis_hallerig00569.t171.126860triticum_aestivumTraesCS3A02G089000.172.039960.7703
g00569arabidopsis_hallerig00569.t170.704259.8592triticum_aestivumTraesCS3B02G104400.171.714360.7143
g00569arabidopsis_hallerig00569.t166.619757.6056zea_maysZm00001eb124020_P00275.198765.0238
g00569arabidopsis_hallerig00569.t176.056365.3521ananas_comosusAco017643.1.mrna173.469463.1293
g00569arabidopsis_hallerig00569.t175.352164.7887asparagus_officinalisONK6232679.731768.5544
g00569arabidopsis_hallerig00569.t170.704259.8592triticum_turgidumTRITD3Bv1G029660.171.714360.7143
g00569arabidopsis_hallerig00569.t171.126860triticum_turgidumTRITD3Av1G025700.272.039960.7703
g00569arabidopsis_hallerig00569.t144.366228.8732caenorhabditis_elegansF10C2.6.153.119734.57
g00569arabidopsis_hallerig00569.t150.422534.0845drosophila_melanogasterFBpp042816531.431121.2467
g00569arabidopsis_hallerig00569.t175.633864.507amborella_trichopodaERN1423280.029868.2563
g00569arabidopsis_hallerig00569.t174.788765.2113corylus_avellanaCav04g03850.t179.49169.3114
g00569arabidopsis_hallerig00569.t178.450767.8873gossypium_raimondiiKJB1613083.885572.5904
g00569arabidopsis_hallerig00569.t170.140858.8732brachypodium_distachyonKQK0227274.217662.2951
g00569arabidopsis_hallerig00569.t166.33855.2113brachypodium_distachyonKQK1304573.023360.7752
g00569arabidopsis_hallerig00569.t149.014133.2394homo_sapiensENSP0000049756953.953536.5891
g00569arabidopsis_hallerig00569.t172.957762.9577fraxinus_excelsiorFRAEX38873_v2_000008860.1.cds62.864154.2476
g00569arabidopsis_hallerig00569.t177.605667.0423fraxinus_excelsiorFRAEX38873_v2_000354420.1.cds81.388570.3102
g00569arabidopsis_hallerig00569.t171.690160.4225oryza_glumipatulaOGLUM01G03790.175.407463.5556
g00569arabidopsis_hallerig00569.t171.690160.8451eragrostis_curvulaTVU2181675.856964.3815
g00569arabidopsis_hallerig00569.t167.323956.6197eragrostis_curvulaTVU2181571.343360
g00569arabidopsis_hallerig00569.t171.690160.2817oryza_indicaBGIOSGA002811-PA70.792859.5271
g00569arabidopsis_hallerig00569.t179.859270.2817vitis_viniferaVitvi03g00728_P00186.301475.9513
g00569arabidopsis_hallerig00569.t176.760668.8732coffea_canephoraCDO9731780.740772.4444
g00569arabidopsis_hallerig00569.t172.112762.1127ipomoea_trilobaitb10g23730.t172.934562.8205
g00569arabidopsis_hallerig00569.t170.845159.7183triticum_urartuTuG1812G0300000994.01.T0174.629162.908
g00569arabidopsis_hallerig00569.t171.549360.2817oryza_meridionalisOMERI01G03340.168.371557.6043
g00569arabidopsis_hallerig00569.t142.816936.338prunus_aviumPav_sc0007151.1_g010.1.mk:mrna89.675576.1062
g00569arabidopsis_hallerig00569.t137.183131.6901prunus_aviumPav_sc0003766.1_g020.1.mk:mrna90.721677.3196
g00569arabidopsis_hallerig00569.t145.774639.0141oryza_sativaOs01t0153400-0184.635472.1354
g00569arabidopsis_hallerig00569.t161.408553.8028pistacia_veracds-EVM0019458.185.156274.6094
g00569arabidopsis_hallerig00569.t179.014169.5775quercus_subercds-POE90403.184.743274.6224
g00569arabidopsis_hallerig00569.t154.225437.1831galdieria_sulphurariaEME2723254.687537.5
g00569arabidopsis_hallerig00569.t159.718351.2676chenopodium_quinoaAUR62023346-RA:cds72.977662.6506
g00569arabidopsis_hallerig00569.t175.49365.9155chenopodium_quinoaAUR62013810-RA:cds78.362668.4211
g00569arabidopsis_hallerig00569.t161.549351.9718dioscorea_rotundataDRNTG_10819.586.363672.9249
g00569arabidopsis_hallerig00569.t170.281761.1268citrus_clementinaESR3597282.479371.7355
g00569arabidopsis_hallerig00569.t179.014169.4366juglans_regiacds.Jr16_21180_p18574.697
g00569arabidopsis_hallerig00569.t159.154947.1831ostreococcus_lucimarinusABO9772367.415753.7721
g00569arabidopsis_hallerig00569.t144.50729.8592saccharomyces_cerevisiaeYPL104W48.024332.2188
g00569arabidopsis_hallerig00569.t143.521137.3239actinidia_chinensisPSS1926880.468869.0104
g00569arabidopsis_hallerig00569.t168.309959.5775actinidia_chinensisPSS2615383.765173.057
g00569arabidopsis_hallerig00569.t167.605656.9014leersia_perrieriLPERR01G03130.158.465349.2083
g00569arabidopsis_hallerig00569.t170.704259.8592aegilops_tauschiiAET3Gv20191600.272.230261.1511
g00569arabidopsis_hallerig00569.t174.929664.507musa_acuminataMa08_p21720.178.350567.4521
g00569arabidopsis_hallerig00569.t162.112751.1268selaginella_moellendorffiiEFJ1797279.459565.4054
g00569arabidopsis_hallerig00569.t162.253551.1268selaginella_moellendorffiiEFJ3712379.639665.4054
g00569arabidopsis_hallerig00569.t172.253561.5493panicum_halliiPUZ5809575.441264.2647
g00569arabidopsis_hallerig00569.t189.014185.7747arabis_alpinaKFK3000594.752691.3043
g00569arabidopsis_hallerig00569.t178.873269.5775quercus_lobataQL11p028820:mrna84.592174.6224
g00569arabidopsis_hallerig00569.t190.281787.1831eutrema_salsugineumESQ5376895.958192.6647
g00569arabidopsis_hallerig00569.t177.183167.4648kalanchoe_fedtschenkoiKaladp0047s0075.1.v1.182.282371.9219
g00569arabidopsis_hallerig00569.t170.563459.1549hordeum_vulgareHORVU.MOREX.r3.3HG0233230.174.112462.1302
g00569arabidopsis_hallerig00569.t179.859270.2817rosa_chinensisPRQ2221685.007574.8126
g00569arabidopsis_hallerig00569.t171.690160.2817oryza_barthiiOBART01G03530.175.295963.3136
g00569arabidopsis_hallerig00569.t17054.2254chara_brauniiGBG7067764.882550.2611
g00569arabidopsis_hallerig00569.t171.971862.8169corymbia_citriodoracds-KAF8027870.182.419471.9355
g00569arabidopsis_hallerig00569.t189.014185.3521brassica_rapa_ro18A01p004870.1_BraROA.192.128388.3382
g00569arabidopsis_hallerig00569.t193.521189.0141brassica_rapa_ro18A08p024390.1_BraROA.165.612662.4506
g00569arabidopsis_hallerig00569.t143.380337.1831olea_europaeaOE9A057453C178.571467.3469
g00569arabidopsis_hallerig00569.t178.309967.6056olea_europaeaOE9A057059C179.656268.7679
g00569arabidopsis_hallerig00569.t137.183133.0986eucalyptus_grandisKCW5683677.876169.3215
g00569arabidopsis_hallerig00569.t153.098639.4366cyanidioschyzon_merolaeCMK087CT48.582536.0825
g00569arabidopsis_hallerig00569.t190.985989.0141camelina_sativaCsa10g008450.197.289295.1807
g00569arabidopsis_hallerig00569.t190.845188.8732camelina_sativaCsa12g009980.197.138695.0301
g00569arabidopsis_hallerig00569.t190.281787.8873camelina_sativaCsa11g009300.196.536193.9759
g00569arabidopsis_hallerig00569.t175.352165.2113daucus_carotaKZM9070180.330369.5195
g00569arabidopsis_hallerig00569.t172.394461.1268digitaria_exilisDexi5A01G0006020.1:cds76.035564.2012
g00569arabidopsis_hallerig00569.t172.535261.4085digitaria_exilisDexi5B01G0006690.1:cds73.782262.4642
g00569arabidopsis_hallerig00569.t171.971860.5634eragrostis_tefEt_3B_030687.CDS76.15564.0835
g00569arabidopsis_hallerig00569.t171.971861.1268eragrostis_tefEt_3A_026326.CDS76.15564.6796
g00569arabidopsis_hallerig00569.t163.66253.9437triticum_dicoccoidesTRIDC3BG014580.581.29568.8849
g00569arabidopsis_hallerig00569.t170.985959.8592triticum_dicoccoidesTRIDC3AG010720.274.777563.0564
g00569arabidopsis_hallerig00569.t192.112791.5493arabidopsis_lyratafgenesh2_kg.7__736__AT4G33760.198.49497.8916
g00569arabidopsis_hallerig00569.t166.619756.7606saccharum_spontaneumSspon.03G0020740-2C-mRNA-1:cds73.447262.5776
g00569arabidopsis_hallerig00569.t177.605665.3521nymphaea_colorataNC4G0152160.1:cds81.629668.7407
g00569arabidopsis_hallerig00569.t171.690160.7042echinochloa_crusgalliscaffold150.71.cds48.801541.3231
g00569arabidopsis_hallerig00569.t171.408460.5634echinochloa_crusgalliscaffold54.127.cds74.778863.4218
g00569arabidopsis_hallerig00569.t171.549360.7042echinochloa_crusgalliscaffold109.334.cds74.926363.5693
g00569arabidopsis_hallerig00569.t188.309984.9296brassica_oleraceaBo1g007870.194.00390.4048
g00569arabidopsis_hallerig00569.t189.014185.493brassica_oleraceaBo3g170520.194.894991.1411
g00569arabidopsis_hallerig00569.t177.746567.7465corchorus_capsularisOMO7528283.007572.3308
g00569arabidopsis_hallerig00569.t170.281758.8732oryza_nivaraONIVA01G03930.375.037662.8571
g00569arabidopsis_hallerig00569.t179.436668.8732trifolium_pratenseTp57577_TGAC_v2_mRNA3377383.308772.2304
g00569arabidopsis_hallerig00569.t172.112761.831cynara_cardunculusKVI0187681.789170.1278
g00569arabidopsis_hallerig00569.t172.253561.9718cynara_cardunculusKVH6908881.948970.2875

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression