RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	fgenesh2_kg.3__306__AT3G03600.1	Gene ID		Accession	-
Symbol		Alias	-	Full Name
Status	Confidence	Length		Strand
Position		RNA binding domain	Ribosomal_S2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	fgenesh2_kg.3__306__AT3G03600.1	877	219aa	fgenesh2_kg.3__306__AT3G03600.1

Gene Model

Click here to download fgenesh2_kg.3__306__AT3G03600.1's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download fgenesh2_kg.3__306__AT3G03600.1's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.2__709__ATCG00160.1	35.5556	19.5556	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	36.5297	20.0913

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	33.79	19.1781	chlamydomonas_reinhardtii	PNW73000	13.9623	7.92453
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	69.863	52.968	cannabis_sativa_female	cds.evm.model.07.217	58.1749	44.1065
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	66.6667	49.7717	beta_vulgaris	KMT17622	59.1093	44.1296
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	93.1507	90.8676	arabidopsis_thaliana	AT3G03600.1	93.1507	90.8676
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	91.3242	87.2146	brassica_napus	CDY51760	96.6184	92.2705
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	89.9543	86.3014	brassica_napus	CDY50652	92.9245	89.1509
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	95.8904	91.3242	brassica_napus	CDX92046	95.8904	91.3242
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	93.6073	89.4977	brassica_napus	CDX74215	93.1818	89.0909
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	89.4977	85.3881	brassica_juncea	cds.BjuA05g38570S	92.4528	88.2076
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	94.0639	89.9543	brassica_juncea	cds.BjuA03g29830S	94.0639	89.9543
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	88.1279	82.1918	brassica_juncea	cds.BjuUnng12910S	90.1869	84.1122
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	93.6073	88.5845	brassica_juncea	cds.BjuB07g28510S	93.1818	88.1818
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	35.6164	21.4612	caenorhabditis_elegans	T23B12.3.1	29.5455	17.803
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	44.7489	29.2237	homo_sapiens	ENSP00000241600	33.1081	21.6216
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	69.863	54.3379	vitis_vinifera	Vitvi19g00222_P001	69.2308	53.8462
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	39.2694	26.0274	drosophila_melanogaster	FBpp0077099	32.5758	21.5909
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	57.0776	45.6621	coffea_canephora	CDP11814	70.2247	56.1798
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	55.7078	44.7489	coffea_canephora	CDP07199	68.5393	55.0562
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	66.6667	55.2511	cynara_cardunculus	KVH49047	62.3932	51.7094
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	65.2968	54.7945	cynara_cardunculus	KVH89199	57.2	48
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	93.1507	89.0411	arabis_alpina	KFK37793	93.1507	89.0411
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	66.6667	52.0548	chenopodium_quinoa	AUR62020701-RA:cds	60.8333	47.5
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	65.7534	50.6849	chenopodium_quinoa	AUR62028023-RA:cds	59.2593	45.679
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	92.6941	90.8676	eutrema_salsugineum	ESQ49740	92.6941	90.8676
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	42.4658	23.7443	saccharomyces_cerevisiae	YHL004W	23.6041	13.198
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	89.9543	86.3014	brassica_oleracea	Bo5g148810.1	92.9245	89.1509
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	96.347	91.7808	brassica_oleracea	Bo3g057130.1	96.347	91.7808
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	66.6667	52.968	kalanchoe_fedtschenkoi	Kaladp0014s0016.1.v1.1.CDS.1	67.907	53.9535
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	96.8036	96.347	arabidopsis_halleri	g26807.t1.cds1	96.8036	96.347
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	95.8904	93.6073	camelina_sativa	Csa15g003400.1.cds1	95.8904	93.6073
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	95.8904	93.6073	camelina_sativa	Csa19g005710.1.cds1	95.8904	93.6073
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	94.5205	92.2374	camelina_sativa	Csa01g003280.1.cds1	94.5205	92.2374
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	37.8995	20.5479	quercus_suber	cds-POF02238.1	10.8073	5.85938
fgenesh2_kg.3__306__AT3G03600.1	arabidopsis_lyrata	fgenesh2_kg.3__306__AT3G03600.1	37.4429	19.1781	quercus_suber	cds-POF15312.1	11.3731	5.82524

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression