RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	fgenesh2_kg.37__5__AT5G43720.1	Gene ID		Accession	-
Symbol		Alias	-	Full Name
Status	Confidence	Length		Strand
Position		RNA binding domain	Efg1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	fgenesh2_kg.37__5__AT5G43720.1	965	288aa	fgenesh2_kg.37__5__AT5G43720.1

Gene Model

Click here to download fgenesh2_kg.37__5__AT5G43720.1's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download fgenesh2_kg.37__5__AT5G43720.1's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_8000515	63.7427	61.9883	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	37.8472	36.8056
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	scaffold_800672.1	97.4522	95.5414	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	53.125	52.0833
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	Al_scaffold_0008_612	88.6179	86.5854	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	75.6944	73.9583
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	74.0854	65.8537	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	84.375	75

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	64.5833	49.6528	marchantia_polymorpha	PTQ46773	43.5597	33.4895
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	63.1944	45.8333	papaver_somniferum	RZC49009	43.128	31.2796
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	77.7778	65.9722	cannabis_sativa_female	cds.novel_model_6294_5bd9a17a	62.2222	52.7778
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	76.0417	65.625	ficus_carica	FCD_00009181-RA:cds	64.7929	55.9172
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	71.1806	59.0278	beta_vulgaris	KMT12669	64.6688	53.6278
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	81.25	68.4028	cucumis_melo	MELO3C006479.2.1	63.2432	53.2432
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	81.25	68.75	cucumis_sativus	KGN56919	70.0599	59.2814
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	81.25	68.0556	populus_trichocarpa	Potri.010G078500.1.v4.1	67.6301	56.6474
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	80.5556	65.9722	populus_trichocarpa	Potri.008G160800.1.v4.1	68.0352	55.7185
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	80.9028	68.75	citrullus_lanatus	Cla97C05G085730.1	70.3927	59.8187
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	96.5278	95.4861	arabidopsis_thaliana	AT5G43720.1	84.4985	83.5866
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	78.4722	67.0139	prunus_dulcis	VVA33299	64.9425	55.4598
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	92.7083	89.5833	brassica_napus	CDX94720	74.7899	72.2689
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	89.9306	85.4167	brassica_napus	CDX96896	71.7452	68.144
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	73.6111	69.7917	brassica_napus	CDY68503	77.9412	73.8971
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	92.7083	89.9306	brassica_napus	CDY22337	76.7241	74.4253
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	78.8194	67.7083	malus_domestica_golden	mRNA:MD16G0180700	65.6069	56.3584
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	81.25	71.1806	malus_domestica_golden	mRNA:MD13G0179700	66.6667	58.4046
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	78.4722	67.0139	prunus_persica	ONI26470	64.9425	55.4598
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	93.75	91.3194	brassica_juncea	cds.BjuA06g01250S	77.5862	75.5747
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	90.2778	86.8056	brassica_juncea	cds.BjuA02g14060S	72.6257	69.8324
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	73.2639	61.1111	cajanus_cajan	C.cajan_07124.t	62.0588	51.7647
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	77.7778	64.2361	glycine_max	KRH34373	67.8788	56.0606
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	72.2222	61.1111	glycine_max	KRG92432	76.4706	64.7059
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	77.7778	62.5	lupinus_angustifolius	OIW07245	60.2151	48.3871
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	78.4722	63.5417	lupinus_angustifolius	OIW07765	63.4831	51.4045
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	79.1667	65.625	phaseolus_vulgaris	ESW15875	69.3009	57.4468
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	78.8194	64.9306	vigna_angularis	KOM35584	65.6069	54.0462
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	73.9583	61.1111	pisum_sativum	Psat6g114920.1.cds	59.3315	49.0251
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	46.5278	37.8472	vigna_radiata	Vradi08g14560.1	64.7343	52.657
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	79.1667	65.9722	vigna_unguiculata	Vigun07g170500.1.v1.2	69.0909	57.5758
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	79.1667	68.4028	solanum_lycopersicum	Solyc09g083270.3.1	62.2951	53.8251
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	81.9444	69.7917	manihot_esculenta	OAY28037	69.4118	59.1176
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	80.5556	66.3194	manihot_esculenta	OAY55652	68.2353	56.1765
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	79.5139	67.3611	capsicum_annuum	PHT85802	67.9525	57.5668
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	79.1667	68.4028	solanum_tuberosum	PGSC0003DMT400015608	65.7061	56.7723
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	76.7361	63.1944	sesamum_indicum	SIN_1021842.t	64.4315	53.0612
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	74.6528	63.1944	lactuca_sativa	cds-PLY97186.1	61.0795	51.7045
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	74.6528	63.5417	helianthus_annuus	mRNA:HanXRQr2_Chr12g0554231	63.9881	54.4643
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	77.4306	62.5	ananas_comosus	Aco017398.1.mrna1	68.8272	55.5556
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	73.9583	59.0278	asparagus_officinalis	ONK67371	66.1491	52.795
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	76.3889	60.0694	amborella_trichopoda	ERN01445	63.5838	50
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	81.9444	70.1389	vitis_vinifera	Vitvi05g00626_P001	70.0297	59.9407
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	78.4722	69.7917	ipomoea_triloba	itb13g18550.t2	66.6667	59.292
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	64.9306	46.875	physcomitrium_patens	Pp3c2_37690V3.1	42.3077	30.543
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	78.8194	68.0556	gossypium_raimondii	KJB34520	65.9884	56.9767
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	81.25	70.8333	gossypium_raimondii	KJB72309	67.2414	58.6207
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	77.7778	66.3194	prunus_avium	Pav_sc0000998.1_g170.1.mk:mrna	64.3678	54.8851
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	77.7778	64.5833	nicotiana_attenuata	OIS98846	18.6356	15.4742
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	78.125	67.0139	coffea_canephora	CDO99145	66.9643	57.4405
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	81.5972	71.1806	theobroma_cacao	EOY05872	65.2778	56.9444
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	79.5139	66.3194	fraxinus_excelsior	FRAEX38873_v2_000188260.1.cds	62.7397	52.3288
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	75	63.1944	cynara_cardunculus	KVG61807	63.5294	53.5294
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	80.5556	69.7917	juglans_regia	cds.Jr12_15190_p1	69.4611	60.1796
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	79.8611	69.0972	juglans_regia	cds.Jr12_15180_p1	69.2771	59.9398
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	79.5139	68.75	pistacia_vera	cds-EVM0000561.1	68.3582	59.1045
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	92.0139	88.5417	arabis_alpina	KFK31700	68.299	65.7216
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	80.2083	69.0972	eucalyptus_grandis	KCW60453	69.1617	59.5808
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	68.0556	54.5139	chenopodium_quinoa	AUR62040390-RA:cds	64.6865	51.8152
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	82.9861	72.9167	citrus_clementina	ESR33329	71.131	62.5
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	94.4444	91.6667	eutrema_salsugineum	ESQ44657	82.1752	79.7583
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	77.4306	63.5417	dioscorea_rotundata	DRNTG_02508.1	67.9878	55.7927
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	79.8611	70.1389	corymbia_citriodora	cds-KAF8016410.1	69.0691	60.6607
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	74.6528	61.8056	musa_acuminata	Ma08_p20360.1	66.7702	55.2795
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	80.9028	70.4861	rosa_chinensis	PRQ32220	69.5522	60.597
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	92.3611	88.8889	brassica_oleracea	Bo7g065670.1	74.5098	71.7087
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	88.8889	85.4167	brassica_oleracea	Bo2g119410.1	79.0123	75.9259
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	80.9028	70.1389	quercus_lobata	QL06p015098:mrna	68.3284	59.2375
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	81.25	71.5278	corchorus_capsularis	OMO54743	59.2405	52.1519
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	76.7361	63.5417	kalanchoe_fedtschenkoi	Kaladp1006s0016.1.v1.1	66.3664	54.955
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	98.6111	98.2639	arabidopsis_halleri	g17562.t1	86.3222	86.0182
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	49.3056	30.2083	ostreococcus_lucimarinus	ABO97201	47.973	29.3919
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	67.7083	56.25	daucus_carota	KZM83141	62.5	51.9231
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	75.6944	56.5972	nymphaea_colorata	NC1G0108060.1:cds	66.4634	49.6951
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	76.0417	56.5972	nymphaea_colorata	NC6G0040340.1:cds	60.3306	44.9036
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	96.1806	93.4028	camelina_sativa	Csa18g010150.1	84.1945	81.7629
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	96.1806	93.0556	camelina_sativa	Csa11g071170.1	84.1945	81.459
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	96.875	94.4444	camelina_sativa	Csa20g067650.1	84.8024	82.6748
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	65.625	45.1389	selaginella_moellendorffii	EFJ35460	54.4669	37.464
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	93.75	91.3194	brassica_rapa_ro18	A06p056630.1_BraROA.1	77.5862	75.5747
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	90.2778	86.8056	brassica_rapa_ro18	A02p040210.1_BraROA.1	78.0781	75.0751
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	79.8611	67.0139	actinidia_chinensis	PSS01408	66.474	55.7803
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	79.1667	68.4028	actinidia_chinensis	PSS15976	65.896	56.9364
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	79.8611	67.7083	olea_europaea	OE9A036261C1	67.0554	56.8513
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	79.8611	68.0556	olea_europaea	OE9A084799C2	67.0554	57.1429
fgenesh2_kg.37__5__AT5G43720.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	81.25	70.1389	quercus_suber	cds-POF22596.1	60.7792	52.4675

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression