RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	fgenesh2_kg.1__353__AT1G04230.1	Gene ID		Accession	-
Symbol		Alias	-	Full Name
Status	Confidence	Length		Strand
Position		RNA binding domain	Efg1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	fgenesh2_kg.1__353__AT1G04230.1	1321	328aa	fgenesh2_kg.1__353__AT1G04230.1

Gene Model

Click here to download fgenesh2_kg.1__353__AT1G04230.1's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download fgenesh2_kg.1__353__AT1G04230.1's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_8000515	71.345	62.5731	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	37.1951	32.622
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	scaffold_800672.1	84.0764	72.6115	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	40.2439	34.7561
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	Al_scaffold_0008_612	76.8293	67.8862	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	57.622	50.9146
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.37__5__AT5G43720.1	84.375	75	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	74.0854	65.8537

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	63.7195	47.561	marchantia_polymorpha	PTQ46773	48.9461	36.534
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	61.5854	44.5122	papaver_somniferum	RZC49009	47.8673	34.5972
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	77.439	64.6341	cannabis_sativa_female	cds.novel_model_6294_5bd9a17a	70.5556	58.8889
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	75.3049	63.4146	ficus_carica	FCD_00009181-RA:cds	73.0769	61.5385
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	71.0366	58.8415	beta_vulgaris	KMT12669	73.5016	60.8833
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	79.2683	67.3781	cucumis_melo	MELO3C006479.2.1	70.2703	59.7297
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	79.2683	67.6829	cucumis_sativus	KGN56919	77.8443	66.4671
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	81.0976	66.1585	populus_trichocarpa	Potri.010G078500.1.v4.1	76.8786	62.7168
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	79.5732	66.1585	populus_trichocarpa	Potri.008G160800.1.v4.1	76.5396	63.6364
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	78.6585	67.3781	citrullus_lanatus	Cla97C05G085730.1	77.9456	66.7674
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	96.6463	94.5122	arabidopsis_thaliana	AT1G04230.1	97.5385	95.3846
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	78.0488	65.2439	prunus_dulcis	VVA33299	73.5632	61.4943
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	78.6585	66.1585	malus_domestica_golden	mRNA:MD16G0180700	74.5665	62.7168
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	79.2683	67.6829	malus_domestica_golden	mRNA:MD13G0179700	74.0741	63.2479
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	77.7439	64.939	prunus_persica	ONI26470	73.2759	61.2069
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	71.3415	59.4512	cajanus_cajan	C.cajan_07124.t	68.8235	57.3529
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	74.6951	61.8902	glycine_max	KRH34373	74.2424	61.5152
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	61.5854	51.2195	glycine_max	KRG92432	74.2647	61.7647
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	75	60.9756	lupinus_angustifolius	OIW07245	66.129	53.7634
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	74.6951	60.6707	lupinus_angustifolius	OIW07765	68.8202	55.8989
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	76.2195	62.5	phaseolus_vulgaris	ESW15875	75.9878	62.31
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	76.2195	62.5	vigna_angularis	KOM35584	72.2543	59.2486
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	71.0366	57.9268	pisum_sativum	Psat6g114920.1.cds	64.9025	52.9248
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	48.7805	39.6341	vigna_radiata	Vradi08g14560.1	77.2947	62.8019
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	76.5244	63.1098	vigna_unguiculata	Vigun07g170500.1.v1.2	76.0606	62.7273
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	76.2195	64.6341	solanum_lycopersicum	Solyc09g083270.3.1	68.306	57.9235
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	79.8781	68.5976	manihot_esculenta	OAY28037	77.0588	66.1765
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	79.5732	66.4634	manihot_esculenta	OAY55652	76.7647	64.1176
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	75	62.8049	capsicum_annuum	PHT85802	72.997	61.1276
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	76.2195	64.6341	solanum_tuberosum	PGSC0003DMT400015608	72.0461	61.0951
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	75.3049	64.3293	sesamum_indicum	SIN_1021842.t	72.0117	61.516
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	71.9512	60.6707	lactuca_sativa	cds-PLY97186.1	67.0455	56.5341
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	72.561	60.3659	helianthus_annuus	mRNA:HanXRQr2_Chr12g0554231	70.8333	58.9286
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	77.7439	62.1951	ananas_comosus	Aco017398.1.mrna1	78.7037	62.963
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	75	59.4512	asparagus_officinalis	ONK67371	76.3975	60.559
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	76.5244	60.3659	amborella_trichopoda	ERN01445	72.5434	57.2254
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	81.4024	69.8171	vitis_vinifera	Vitvi05g00626_P001	79.2285	67.9525
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	77.439	67.0732	ipomoea_triloba	itb13g18550.t2	74.9263	64.8968
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	63.7195	46.3415	physcomitrium_patens	Pp3c2_37690V3.1	47.2851	34.3891
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	77.1341	67.0732	gossypium_raimondii	KJB34520	73.5465	63.9535
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	79.2683	69.2073	gossypium_raimondii	KJB72309	74.7126	65.2299
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	77.439	64.6341	prunus_avium	Pav_sc0000998.1_g170.1.mk:mrna	72.9885	60.9195
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	75	62.5	nicotiana_attenuata	OIS98846	20.4659	17.0549
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	75.9146	63.4146	coffea_canephora	CDO99145	74.1071	61.9048
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	80.4878	69.5122	theobroma_cacao	EOY05872	73.3333	63.3333
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	79.2683	64.6341	fraxinus_excelsior	FRAEX38873_v2_000188260.1.cds	71.2329	58.0822
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	74.0854	61.5854	cynara_cardunculus	KVG61807	71.4706	59.4118
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	79.2683	67.9878	juglans_regia	cds.Jr12_15190_p1	77.8443	66.7665
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	78.6585	67.3781	juglans_regia	cds.Jr12_15180_p1	77.7108	66.5663
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	78.6585	67.0732	pistacia_vera	cds-EVM0000561.1	77.0149	65.6716
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	79.2683	68.2927	eucalyptus_grandis	KCW60453	77.8443	67.0659
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	67.3781	53.6585	chenopodium_quinoa	AUR62040390-RA:cds	72.9373	58.0858
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	82.0122	70.1219	citrus_clementina	ESR33329	80.0595	68.4524
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	76.8293	63.7195	dioscorea_rotundata	DRNTG_02508.1	76.8293	63.7195
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	78.3537	69.2073	corymbia_citriodora	cds-KAF8016410.1	77.1772	68.1682
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	75.3049	60.9756	musa_acuminata	Ma08_p20360.1	76.7081	62.1118
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	80.1829	68.2927	rosa_chinensis	PRQ32220	78.5075	66.8657
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	79.2683	68.5976	quercus_lobata	QL06p015098:mrna	76.2463	65.9824
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	80.4878	69.2073	corchorus_capsularis	OMO54743	66.8354	57.4684
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	74.6951	62.1951	kalanchoe_fedtschenkoi	Kaladp1006s0016.1.v1.1	73.5736	61.2613
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	98.4756	97.8659	arabidopsis_halleri	g02053.t1	99.3846	98.7692
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	47.561	30.4878	ostreococcus_lucimarinus	ABO97201	52.7027	33.7838
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	67.6829	57.0122	daucus_carota	KZM83141	71.1538	59.9359
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	76.5244	57.622	nymphaea_colorata	NC1G0108060.1:cds	76.5244	57.622
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	76.2195	57.622	nymphaea_colorata	NC6G0040340.1:cds	68.8705	52.0661
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	62.1951	58.8415	camelina_sativa	Csa03g005470.1	88.6957	83.913
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	54.5732	46.9512	camelina_sativa	Csa14g005380.1	73.6626	63.3745
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	73.1707	66.1585	camelina_sativa	Csa17g007370.1	55.814	50.4651
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	57.622	42.378	selaginella_moellendorffii	EFJ35460	54.4669	40.0576
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	79.2683	65.8537	actinidia_chinensis	PSS01408	75.1445	62.4277
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	78.3537	66.7683	actinidia_chinensis	PSS15976	74.2775	63.2948
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	79.2683	65.8537	olea_europaea	OE9A036261C1	75.8018	62.9738
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	79.2683	65.8537	olea_europaea	OE9A084799C2	75.8018	62.9738
fgenesh2_kg.1__353__AT1G04230.1	arabidopsis_lyrata	fgenesh2_kg.1__353__AT1G04230.1	78.9634	67.6829	quercus_suber	cds-POF22596.1	67.2727	57.6623

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression