Description

Ensembl ID fgenesh1_pm.C_scaffold_2000638 Gene ID Accession -
Symbol Alias - Full Name
Status Confidence Length Strand
Position RNA binding domain LSM
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- fgenesh1_pm.C_scaffold_2000638 1773 590aa fgenesh1_pm.C_scaffold_2000638

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pg.C_scaffold_600056751.282139.3162arabidopsis_lyratafgenesh1_pm.C_scaffold_200063820.33915.5932
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh2_kg.7__3133__AT5G37010.149.525340.3481arabidopsis_lyratafgenesh1_pm.C_scaffold_200063853.050843.2203

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063847.796633.7288papaver_somniferumRZC7155338.683127.2977
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063847.288132.7119papaver_somniferumRZC7518038.376926.5475
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063827.796621.1864cannabis_sativa_femalecds.evm.model.07.87640.493830.8642
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063848.644135.7627ficus_caricaFCD_00016433-RA:cds40.82530.0142
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063844.915334.7458beta_vulgarisKMS9819636.152827.9673
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_20006385037.1186cucumis_meloMELO3C025107.2.136.967427.4436
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063849.491537.2881cucumis_sativusKGN5107539.353129.6496
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063848.644136.1017populus_trichocarpaPotri.015G147900.1.v4.138.941728.9009
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063848.305137.1186populus_trichocarpaPotri.012G145200.1.v4.137.798429.0451
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063847.966136.1017citrullus_lanatusCla97C01G008710.138.191628.7449
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063863.389859.8305arabidopsis_thalianaAT1G65710.182.197877.5824
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063846.949235.2542prunus_dulcisVVA3035336.067727.0833
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063841.016935.7627brassica_napusCDY6334659.168751.5892
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063840.847535.7627brassica_napusCDY1058461.323253.6896
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063847.796634.7458malus_domestica_goldenmRNA:MD14G00636004029.078
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063845.932233.7288malus_domestica_goldenmRNA:MD12G006060038.16928.0282
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063833.559324.9153prunus_persicaONH9524240.740730.2469
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063841.186435.4237brassica_junceacds.BjuA08g00770S58.837850.6053
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063842.033936.4407brassica_junceacds.BjuB07g01430S54.867347.5664
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063845.423734.7458cajanus_cajanC.cajan_15137.t42.472332.4881
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063848.644136.9492cajanus_cajanC.cajan_10529.t47.049235.7377
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063848.305137.7966glycine_maxKRG9805839.310330.7586
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_20006385037.6271glycine_maxKRH3072140.300530.3279
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063846.610234.0678glycine_maxKRH7289040.560529.646
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063847.627135.9322glycine_maxKRH1724339.245829.6089
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063845.762733.8983lupinus_angustifoliusOIW0442238.737428.6944
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063850.508538.1356lupinus_angustifoliusOIW0261641.274231.1634
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063844.576332.2034lupinus_angustifoliusOIV9568443.185631.1987
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063846.949236.9492lupinus_angustifoliusOIW1611242.81333.694
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063848.983136.6102phaseolus_vulgarisESW1893440.250730.0836
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063847.796635.2542phaseolus_vulgarisESW1398243.251531.9018
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063846.101732.7119medicago_truncatulaKEH3455739.941328.3407
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063847.118636.7797medicago_truncatulaAES9906042.703533.3333
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063846.440734.0678vigna_angularisKOM4711840.353529.6024
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063846.101734.7458vigna_angularisKOM5276738.418128.9548
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063846.949237.6271pisum_sativumPsat2g048640.2.cds42.615434.1538
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063843.898330.5085pisum_sativumPsat5g144840.1.cds43.529430.2521
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063820.847517.4576vigna_radiataVradi07g08300.142.708335.7639
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063838.813628.6441vigna_radiataVradi06g06110.144.379832.7519
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063842.542433.8983vigna_radiataVradi10g04200.143.275934.4828
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063847.796636.9492vigna_unguiculataVigun06g092700.1.v1.240.751431.5029
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063847.457634.7458vigna_unguiculataVigun08g138500.1.v1.242.87931.3936
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063842.203431.0169solanum_lycopersicumSolyc02g081440.3.137.053627.2321
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063836.440725.5932solanum_lycopersicumSolyc02g036460.3.137.852126.5845
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063848.135635.4237manihot_esculentaOAY5726939.064628.7483
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063848.474636.4407manihot_esculentaOAY6061240.05630.112
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063848.135636.4407capsicum_annuumPHT9094442.451432.1375
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063838.983128.6441capsicum_annuumPHT8922140.70829.9115
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063817.796613.5593solanum_tuberosumPGSC0003DMT40005076240.85631.1284
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063847.796636.9492solanum_tuberosumPGSC0003DMT40005079041.531732.106
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063837.288127.1186solanum_tuberosumPGSC0003DMT40005531938.800728.2187
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063846.271234.2373sesamum_indicumSIN_1006482.t40.99130.3303
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063845.254235.4237lactuca_sativacds-PLY82761.143.986834.4316
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063835.254225.5932lactuca_sativacds-PLY82620.147.597334.5538
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063845.762736.4407helianthus_annuusmRNA:HanXRQr2_Chr14g064531144.045735.0734
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063837.966129.4915helianthus_annuusmRNA:HanXRQr2_Chr07g029316142.748133.2061
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063834.745822.2034amborella_trichopodaERN1020430.23619.3215
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063841.864432.5424corylus_avellanaCav05g16090.t138.775530.1413
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063848.644136.4407corylus_avellanaCav05g16080.t138.679228.9757
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063846.779735.4237vitis_viniferaVitvi04g00761_P00138.873229.4366
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063849.491538.6441ipomoea_trilobaitb03g05220.t143.067833.6283
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063847.627135.7627gossypium_raimondiiKJB4323244.11333.124
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063846.949234.9153prunus_aviumPav_sc0000514.1_g190.1.mk:mrna36.020826.788
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063839.830528.9831nicotiana_attenuataOIT0658739.166728.5
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063848.474637.4576nicotiana_attenuataOIT0219841.630332.1688
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063850.169537.9661theobroma_cacaoEOY0307637.70728.535
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063849.830538.1356fraxinus_excelsiorFRAEX38873_v2_000289850.1.cds35.636427.2727
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063847.118635.4237fraxinus_excelsiorFRAEX38873_v2_000054810.1.cds39.942530.0287
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063847.966136.4407fraxinus_excelsiorFRAEX38873_v2_000014710.1.cds41.740431.7109
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063847.796637.2881cynara_cardunculusKVI0869645.483935.4839
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063849.830537.1186juglans_regiacds.Jr01_01760_p137.837828.1853
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063849.32236.6102juglans_regiacds.Jr01_01770_p138.748328.7617
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063848.474636.7797pistacia_veracds-EVM0002266.148.639536.9048
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063850.508545.4237arabis_alpinaKFK4101667.420860.6335
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063836.779726.7797eucalyptus_grandisKCW5222943.141231.4115
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063830.33921.8644chenopodium_quinoaAUR62017269-RA:cds31.850522.9537
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063850.33937.9661citrus_clementinaESR4296740.135130.2703
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063851.186444.0678eutrema_salsugineumESQ2881162.655653.9419
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063846.610236.1017corymbia_citriodoracds-KAF8010300.138.623629.9157
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063847.627134.7458rosa_chinensisPRQ2169040.665729.6671
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063849.830538.1356quercus_lobataQL02p055515:mrna38.033629.1074
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_20006385038.1356quercus_lobataQL02p056567:mrna38.16329.1074
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063848.983137.2881corchorus_capsularisOMO9244842.814832.5926
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063843.389831.3559kalanchoe_fedtschenkoiKaladp0039s0504.1.v1.150.196136.2745
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063872.711971.017arabidopsis_hallerig24370.t1.cds193.668191.4847
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063857.796653.0508camelina_sativaCsa07g029600.1.cds173.491467.4569
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063857.796652.7119camelina_sativaCsa16g023050.1.cds173.969667.462
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063857.966153.0508camelina_sativaCsa05g057030.1.cds172.921166.7377
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063840.67834.5763brassica_rapa_ro18A08p001080.1_BraROA.158.536649.7561
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063849.66138.1356actinidia_chinensisPSS3012146.434235.6577
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063848.644138.4746actinidia_chinensisPSS0036545.339735.861
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063845.932235.2542olea_europaeaOE9A043120C140.690731.2312
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063848.474636.4407olea_europaeaOE9A101349C143.072332.3795
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063846.949237.1186trifolium_pratenseTp57577_TGAC_v2_mRNA1591141.779833.0317
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063843.559330trifolium_pratenseTp57577_TGAC_v2_mRNA3868939.538527.2308
fgenesh1_pm.C_scaffold_2000638arabidopsis_lyratafgenesh1_pm.C_scaffold_200063847.288136.2712quercus_subercds-POE49990.139.240530.0985

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression