RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	fgenesh1_pg.C_scaffold_1002723	Gene ID		Accession	-
Symbol		Alias	-	Full Name
Status	Confidence	Length		Strand
Position		RNA binding domain	Met_10 , Methyltransf_15
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	fgenesh1_pg.C_scaffold_1002723	702	233aa	fgenesh1_pg.C_scaffold_1002723

Gene Model

Click here to download fgenesh1_pg.C_scaffold_1002723's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download fgenesh1_pg.C_scaffold_1002723's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh2_kg.1__3801__AT1G45231.2	29.4545	22.5455	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	69.5279	53.2189

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	50.2146	36.0515	chondrus_crispus	CDF40759	46.063	33.0709
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	56.6524	37.7682	chlamydomonas_reinhardtii	PNW82710	10.7492	7.16612
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	72.103	56.6524	marchantia_polymorpha	PTQ32167	24.5255	19.2701
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	29.1845	24.0343	papaver_somniferum	RZC73702	82.9268	68.2927
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	96.1373	94.4206	arabidopsis_thaliana	AT1G30545.2	96.1373	94.4206
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	75.1073	59.6567	prunus_dulcis	VVA32293	59.727	47.4403
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	62.2318	49.3562	brassica_napus	CDY57504	32.8054	26.0181
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	85.8369	75.1073	brassica_napus	CDY47154	86.9565	76.087
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	84.9785	74.6781	brassica_napus	CDY12465	86.087	75.6522
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	49.7854	42.9185	brassica_napus	CDY02304	69.8795	60.241
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	76.824	59.2275	malus_domestica_golden	mRNA:MD17G0194700	71.8876	55.4217
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	75.1073	60.0858	prunus_persica	ONI16539	69.7211	55.7769
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	46.3519	41.6309	brassica_juncea	cds.BjuB04g16660S	94.7368	85.0877
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	84.1202	72.9614	brassica_juncea	cds.BjuB07g16650S	73.9623	64.1509
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	84.9785	73.8197	brassica_juncea	cds.BjuA08g09500S	71.4801	62.0939
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	74.2489	59.2275	solanum_lycopersicum	Solyc01g104990.3.1	70.9016	56.5574
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	75.5365	59.2275	capsicum_annuum	PHT64179	64.7059	50.7353
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	74.6781	60.515	solanum_tuberosum	PGSC0003DMT400032794	71.0204	57.551
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	76.3949	58.3691	sesamum_indicum	SIN_1023007.t	53.6145	40.9639
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	76.3949	57.9399	lactuca_sativa	cds-PLY88536.1	66.4179	50.3731
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	77.6824	60.515	helianthus_annuus	mRNA:HanXRQr2_Chr11g0485861	71.2598	55.5118
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	45.0644	33.9056	avena_sativa_sang	AVESA.00010b.r2.7DG1342600.2.CDS	36.4583	27.4306
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	66.0944	52.7897	avena_sativa_sang	AVESA.00010b.r2.5CG0870810.1.CDS	49.6774	39.6774
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	66.9528	52.7897	avena_sativa_sang	AVESA.00010b.r2.7AG1206870.1.CDS	43.9437	34.6479
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	66.0944	52.3605	avena_sativa_sang	AVESA.00010b.r2.7DG1334310.1.CDS	70	55.4545
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	36.4807	27.0386	avena_sativa_ot3098	cds.AVESA.00001b.r3.5Cg0002990.1	38.2883	28.3784
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	67.382	51.5021	oryza_brachyantha	OB06G15260.1	43.7326	33.4262
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	69.9571	51.9313	oryza_punctata	OPUNC06G05480.1	52.9221	39.2857
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	66.0944	51.073	oryza_glaberrima	ORGLA06G0052200.1	50	38.6364
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	66.0944	53.2189	secale_cereale	SECCE4Rv1G0256650.1	50	40.2597
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	67.382	52.3605	setaria_viridis	TKW19807	52.862	41.0774
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	58.3691	47.6395	setaria_italica	KQL09437	71.9577	58.7302
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	63.9485	48.4979	zea_mays	Zm00001eb374430_P001	37.9135	28.7532
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	67.8112	53.2189	triticum_turgidum	TRITD7Bv1G021470.1	47.8788	37.5758
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	70.3863	57.5107	ananas_comosus	Aco011584.1.mrna1	34.7458	28.3898
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	66.9528	52.7897	triticum_aestivum	TraesCS7D02G153600.1	50.3226	39.6774
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	67.8112	53.2189	triticum_aestivum	TraesCS7B02G055700.1	47.8788	37.5758
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	53.6481	42.0601	triticum_aestivum	TraesCS7A02G151900.1	65.7895	51.5789
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	57.9399	40.7725	caenorhabditis_elegans	T08G11.4a.1	23.8516	16.7845
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	66.9528	51.9313	sorghum_bicolor	OQU75980	52.1739	40.4682
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	70.8155	56.6524	asparagus_officinalis	ONK69685	69.9153	55.9322
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	63.0901	47.6395	homo_sapiens	ENSP00000260129	17.2333	13.0129
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	73.8197	59.2275	amborella_trichopoda	ERN07089	54.2587	43.5331
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	76.824	63.9485	corylus_avellana	Cav07g17190.t1	71.0317	59.127
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	76.824	63.0901	vitis_vinifera	Vitvi09g01260_P001	72.1774	59.2742
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	63.0901	40.7725	drosophila_melanogaster	FBpp0310356	31.5451	20.3863
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	74.6781	58.3691	ipomoea_triloba	itb01g02120.t2	71.3115	55.7377
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	66.0944	52.3605	brachypodium_distachyon	KQK19226	50.3268	39.8693
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	67.8112	53.2189	oryza_sativa	Os06t0187100-00	51.1327	40.1294
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	64.8069	48.4979	eragrostis_curvula	TVU12273	45.0746	33.7313
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	72.103	51.9313	physcomitrium_patens	Pp3c22_18570V3.1	23.8298	17.1631
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	76.3949	60.0858	prunus_avium	Pav_sc0001748.1_g080.1.mk:mrna	70.9163	55.7769
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	56.6524	42.9185	nicotiana_attenuata	OIT27928	70.2128	53.1915
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	76.824	62.6609	coffea_canephora	CDO97474	69.3798	56.5891
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	42.4893	33.9056	theobroma_cacao	EOY26163	50.5102	40.3061
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	62.6609	41.6309	ciona_savignyi	ENSCSAVP00000018990	48.3444	32.1192
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	76.3949	59.6567	fraxinus_excelsior	FRAEX38873_v2_000320200.1.cds	65.2015	50.9158
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	77.2532	60.515	cynara_cardunculus	KVI10940	70.0389	54.8638
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	75.5365	60.515	juglans_regia	cds.Jr07_32590_p1	63.0824	50.5376
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	65.6652	49.3562	saccharum_spontaneum	Sspon.08G0012690-3C-mRNA-1:cds	42.3823	31.856
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	66.9528	51.5021	saccharum_spontaneum	Sspon.08G0012690-1A-mRNA-1:cds	52.7027	40.5405
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	83.691	76.824	arabis_alpina	KFK44865	86.6667	79.5556
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	78.1116	63.9485	eucalyptus_grandis	KCW53924	73.6842	60.3239
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	49.3562	31.7597	galdieria_sulphuraria	EME29215	45.6349	29.3651
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	65.6652	48.927	chara_braunii	GBG80695	8.1862	6.09952
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	48.927	33.4764	saccharomyces_cerevisiae	YPL157W	36.1905	24.7619
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	77.2532	61.8026	corymbia_citriodora	cds-KAF8021675.1	53.7313	42.9851
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	68.2403	56.2232	musa_acuminata	Ma06_p32590.1	60	49.434
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	77.6824	63.5193	rosa_chinensis	PRQ50336	72.1116	58.9641
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	33.4764	24.4635	rosa_chinensis	PRQ53563	61.4173	44.8819
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	67.382	52.3605	hordeum_vulgare	HORVU.MOREX.r3.7HG0659770.1	51.3072	39.8693
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	84.9785	74.6781	brassica_oleracea	Bo8g037960.1	86.087	75.6522
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	57.5107	43.7768	quercus_lobata	QL09p042313:mrna	71.2766	54.2553
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	78.1116	62.2318	quercus_lobata	QL09p042296:mrna	73.6842	58.7045
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	50.6438	34.764	cyanidioschyzon_merolae	CMS387CT	41.6961	28.6219
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	23.6052	18.0258	ostreococcus_lucimarinus	ABO94756	60.4396	46.1538
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	56.2232	42.0601	daucus_carota	KZN09141	71.5847	53.5519
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	66.9528	51.5021	digitaria_exilis	Dexi4B01G0004360.1:cds	51.4851	39.604
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	63.5193	50.6438	digitaria_exilis	Dexi4A01G0006440.1:cds	50.3401	40.1361
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	64.3777	49.3562	nymphaea_colorata	NC9G0169690.1:cds	63.5593	48.7288
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	87.1245	79.8283	camelina_sativa	Csa14g038310.1	88.6463	81.2227
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	87.1245	80.2575	camelina_sativa	Csa17g044800.1	88.6463	81.6594
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	82.8326	74.2489	camelina_sativa	Csa03g033800.1	74.5174	66.7954
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	64.3777	50.6438	selaginella_moellendorffii	EFJ27878	73.1707	57.561
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	64.8069	51.5021	selaginella_moellendorffii	EFJ36793	73.6585	58.5366
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	85.4077	74.6781	brassica_rapa_ro18	A08p016750.1_BraROA.1	86.5217	75.6522
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	66.9528	51.9313	eragrostis_tef	Et_2A_017578.CDS	51.8272	40.1993
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	66.9528	51.9313	eragrostis_tef	Et_2B_021605.CDS	51.8272	40.1993
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	69.0987	53.2189	panicum_hallii	PUZ61870	50.9494	39.2405
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	74.6781	60.0858	actinidia_chinensis	PSS26221	67.9688	54.6875
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	44.206	35.6223	olea_europaea	OE9A104947C1	73.0496	58.8652
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	44.206	31.3305	olea_europaea	OE9A090653C1	70.068	49.6599
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	75.5365	60.515	olea_europaea	OE9A076017C2	69.5652	55.7312
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	65.2361	51.9313	echinochloa_crusgalli	scaffold34.242.cds	48.7179	38.7821
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	66.5236	52.3605	echinochloa_crusgalli	scaffold175.36.cds	51.8395	40.8027
fgenesh1_pg.C_scaffold_1002723	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_1002723	66.0944	53.6481	echinochloa_crusgalli	scaffold10.534.cds	51.505	41.806

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression