RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	YNL085W	Gene ID	855639	Accession	-
Symbol	MKT1	Alias	NA	Full Name	NA
Status	Confidence	Length	2493 bases	Strand	Plus strand
Position	XIV : 467131 - 469623	RNA binding domain	MKT1_C , MKT1_N
Summary	Predicted to enable 5'-flap endonuclease activity. Involved in cellular response to DNA damage stimulus. Located in P-body and nuclear periphery. Part of polysome. [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
YNL085W	MKT1_C	PF12246	9.7e-65	1
YNL085W	MKT1_N	PF12247	5.7e-30	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	YNL085W_mRNA	2493	830aa	YNL085W

Gene Model

Click here to download YNL085W's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download YNL085W's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
YNL085W

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
YNL085W

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0000932	located_in P-body	1	IDA	Saccharomyces_cerevisiae(559292)	Component
GO:0003730	enables mRNA 3-UTR binding	1	IBA	Saccharomyces_cerevisiae(559292)	Function
GO:0004518	enables nuclease activity	1	IEA	Saccharomyces_cerevisiae(559292)	Function
GO:0004520	enables DNA endonuclease activity	1	ISS	Saccharomyces_cerevisiae(559292)	Function
GO:0005634	is_active_in nucleus	1	IBA	Saccharomyces_cerevisiae(559292)	Component
GO:0005737	located_in cytoplasm	2	HDA,IEA	Saccharomyces_cerevisiae(559292)	Component
GO:0005829	located_in cytosol	1	IEA	Saccharomyces_cerevisiae(559292)	Component
GO:0005844	part_of polysome	1	IDA	Saccharomyces_cerevisiae(559292)	Component
GO:0006417	involved_in regulation of translation	1	IEA	Saccharomyces_cerevisiae(559292)	Process
GO:0006974	involved_in DNA damage response	2	IEA,IMP	Saccharomyces_cerevisiae(559292)	Process
GO:0010494	located_in cytoplasmic stress granule	1	HDA	Saccharomyces_cerevisiae(559292)	Component
GO:0034399	located_in nuclear periphery	1	IDA	Saccharomyces_cerevisiae(559292)	Component

Expression