RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	YNL085W	Gene ID	855639	Accession	-
Symbol	MKT1	Alias	NA	Full Name	NA
Status	Confidence	Length	2493 bases	Strand	Plus strand
Position	XIV : 467131 - 469623	RNA binding domain	MKT1_C , MKT1_N
Summary	Predicted to enable 5'-flap endonuclease activity. Involved in cellular response to DNA damage stimulus. Located in P-body and nuclear periphery. Part of polysome. [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

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Protein	Domain	Pfam ID	E-value	Domain number
YNL085W	MKT1_C	PF12246	9.7e-65	1
YNL085W	MKT1_N	PF12247	5.7e-30	2

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RNA binding proteomes (RBPomes)

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Pubmed ID	Full Name	Cell	Author	Time	Doi
30962360	PMID30962360_yeast	-	Vadim Shchepachev	2019 Apr 8	doi: 10.15252/msb.20188689.
30962360	PMID30962360_yeast_TRAPP	-	Vadim Shchepachev	2019 Apr 8	doi: 10.15252/msb.20188689.
34278261	PMID34278261_yeast	-	Ana M Matia-Gonzalez	2021 Jun 19	doi: 10.1016/j.isci.2021.102753.eCollection 2021 Jul 23
36574981	PMID36574981_yeast	-	Claudio Asencio	2023 Mar	doi: 10.1261/rna.079408.122.Epub 2022 Dec 27

Showing 1 to 4 of 4 entries

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
-	YNL085W_mRNA	2493	830aa	YNL085W

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Gene Model

Click here to download YNL085W's gene model file

Protein-Protein Interaction (PPI)

Click here to download YNL085W's PPI file

Gene Ontology

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Go ID	Go term	No. evidence	Entries	Species	Category
GO:0005737	located_in cytoplasm	2	HDA,IEA	Saccharomyces_cerevisiae(559292)	Component
GO:0006974	involved_in DNA damage response	2	IEA,IMP	Saccharomyces_cerevisiae(559292)	Process
GO:0000932	located_in P-body	1	IDA	Saccharomyces_cerevisiae(559292)	Component
GO:0003730	enables mRNA 3-UTR binding	1	IBA	Saccharomyces_cerevisiae(559292)	Function
GO:0004518	enables nuclease activity	1	IEA	Saccharomyces_cerevisiae(559292)	Function
GO:0004520	enables DNA endonuclease activity	1	ISS	Saccharomyces_cerevisiae(559292)	Function
GO:0005634	is_active_in nucleus	1	IBA	Saccharomyces_cerevisiae(559292)	Component
GO:0005829	located_in cytosol	1	IEA	Saccharomyces_cerevisiae(559292)	Component
GO:0005844	part_of polysome	1	IDA	Saccharomyces_cerevisiae(559292)	Component
GO:0006417	involved_in regulation of translation	1	IEA	Saccharomyces_cerevisiae(559292)	Process

Showing 1 to 10 of 12 entries

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Contents

Description
RBDs
RBPomes
Transcripts
Gene Model
PPI
Gene Ontology