RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	YLR347C	Gene ID	851061	Accession	-
Symbol	KAP95	Alias	RSL1	Full Name	Karyopherin beta; forms a complex with Srp1p/Kap60p; interacts with nucleoporins to mediate nuclear import of NLS-containing cargo proteins via the nuclear pore complex; regulates PC biosynthesis; GDP-to-GTP exchange factor for Gsp1p
Status	Confidence	Length	2586 bases	Strand	Minus strand
Position	XII : 823828 - 826413	RNA binding domain	IBN_N
Summary	Enables guanyl-nucleotide exchange factor activity and nuclear import signal receptor activity. Involved in several processes, including intracellular protein transport; nuclear pore complex assembly; and regulation of protein desumoylation. Located in cytoplasm and nucleus. Part of NLS-dependent protein nuclear import complex. Orthologous to human KPNB1 (karyopherin subunit beta 1). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

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Protein	Domain	Pfam ID	E-value	Domain number
YLR347C	IBN_N	PF03810	8.1e-16	1

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Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
-	YLR347C_mRNA	2586	861aa	YLR347C

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Gene Model

Click here to download YLR347C's gene model file

Protein-Protein Interaction (PPI)

Click here to download YLR347C's PPI file

Paralogs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
YLR347C	[{"sID": "YLR347C"	"sSP": "saccharomyces_cerevisiae"	"sProtein": "YLR347C"	"sPercPos": 27.6423	"sPercID": 11.7305	"tID": "YMR308C"	"tSP": "saccharomyces_cerevisiae"	"tGene": "NA"

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Orthologs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
YLR347C	saccharomyces_cerevisiae	YLR347C	52.6132	30.8943	caenorhabditis_elegans	F28B3.8.2	50.558	29.6875
YLR347C	saccharomyces_cerevisiae	YLR347C	54.1231	32.5203	drosophila_melanogaster	FBpp0294037	52.7149	31.6742
YLR347C	saccharomyces_cerevisiae	YLR347C	54.2393	32.8688	ciona_intestinalis	ENSCINP00000009625	52.8879	32.0498
YLR347C	saccharomyces_cerevisiae	YLR347C	54.2393	33.5656	petromyzon_marinus	ENSPMAP00000007886	53.1286	32.8783
YLR347C	saccharomyces_cerevisiae	YLR347C	51.4518	32.0557	eptatretus_burgeri	ENSEBUP00000022558	51.3326	31.9815
YLR347C	saccharomyces_cerevisiae	YLR347C	51.9164	32.9849	callorhinchus_milii	ENSCMIP00000037311	49.3377	31.3466
YLR347C	saccharomyces_cerevisiae	YLR347C	49.8258	31.2427	latimeria_chalumnae	ENSLACP00000020047	55.2124	34.6203
YLR347C	saccharomyces_cerevisiae	YLR347C	55.2846	34.3786	lepisosteus_oculatus	ENSLOCP00000016968	54.2141	33.713
YLR347C	saccharomyces_cerevisiae	YLR347C	53.3101	33.9141	clupea_harengus	ENSCHAP00000020697	49.568	31.5335
YLR347C	saccharomyces_cerevisiae	YLR347C	55.5168	35.1916	danio_rerio	ENSDARP00000135519	54.5662	34.589

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Gene Ontology

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Go ID	Go term	No. evidence	Entries	Species	Category
GO:0005634	is_active_in nucleus	3	IBA,IDA,IEA	Saccharomyces_cerevisiae(559292)	Component
GO:0005737	is_active_in cytoplasm	3	IBA,IDA,IEA	Saccharomyces_cerevisiae(559292)	Component
GO:0006606	involved_in protein import into nucleus	2	IBA,IEA	Saccharomyces_cerevisiae(559292)	Process
GO:0006656	involved_in phosphatidylcholine biosynthetic process	2	IGI,IMP	Saccharomyces_cerevisiae(559292)	Process
GO:0061608	enables nuclear import signal receptor activity	2	IBA,IDA	Saccharomyces_cerevisiae(559292)	Function
GO:0005085	enables guanyl-nucleotide exchange factor activity	1	IDA	Saccharomyces_cerevisiae(559292)	Function
GO:0005643	part_of nuclear pore	1	IEA	Saccharomyces_cerevisiae(559292)	Component
GO:0006607	involved_in NLS-bearing protein import into nucleus	1	IMP	Saccharomyces_cerevisiae(559292)	Process
GO:0006612	involved_in protein targeting to membrane	1	IMP	Saccharomyces_cerevisiae(559292)	Process
GO:0006886	involved_in intracellular protein transport	1	IEA	Saccharomyces_cerevisiae(559292)	Process

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs
Gene Ontology