RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	YJR132W	Gene ID	853596	Accession	-
Symbol	NMD5	Alias	KAP119	Full Name	Karyopherin; a carrier protein involved in nuclear import of proteins; importin beta homolog
Status	Confidence	Length	3147 bases	Strand	Plus strand
Position	X : 669522 - 672668	RNA binding domain	IBN_N
Summary	Enables nuclear import signal receptor activity. Involved in protein import into nucleus. Located in cytoplasm and nucleus. Orthologous to human IPO7 (importin 7) and IPO8 (importin 8). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
YJR132W	IBN_N	PF03810	8.4e-19	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	YJR132W_mRNA	3147	1048aa	YJR132W

Gene Model

Click here to download YJR132W's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download YJR132W's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
YJR132W

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
YJR132W

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0005634	located_in nucleus	2	IDA,IEA	Saccharomyces_cerevisiae(559292)	Component
GO:0005635	is_active_in nuclear envelope	1	IBA	Saccharomyces_cerevisiae(559292)	Component
GO:0005737	located_in cytoplasm	3	HDA,IDA,IEA	Saccharomyces_cerevisiae(559292)	Component
GO:0005829	is_active_in cytosol	1	IBA	Saccharomyces_cerevisiae(559292)	Component
GO:0006606	involved_in protein import into nucleus	2	IBA,IMP	Saccharomyces_cerevisiae(559292)	Process
GO:0006886	involved_in intracellular protein transport	1	IEA	Saccharomyces_cerevisiae(559292)	Process
GO:0015031	involved_in protein transport	1	IEA	Saccharomyces_cerevisiae(559292)	Process
GO:0031267	enables small GTPase binding	1	IEA	Saccharomyces_cerevisiae(559292)	Function
GO:0034399	located_in nuclear periphery	1	HDA	Saccharomyces_cerevisiae(559292)	Component
GO:0051170	involved_in import into nucleus	1	IEA	Saccharomyces_cerevisiae(559292)	Process
GO:0061608	enables nuclear import signal receptor activity	2	IDA,IMP	Saccharomyces_cerevisiae(559292)	Function

Expression