RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	YDR041W	Gene ID	851611	Accession	-
Symbol	RSM10	Alias	uS10m	Full Name	Mitochondrial ribosomal protein of the small subunit; has similarity to E. coli S10 ribosomal protein; essential for viability, unlike most other mitoribosomal proteins
Status	Confidence	Length	612 bases	Strand	Plus strand
Position	IV : 539803 - 540414	RNA binding domain	Ribosomal_S10
Summary	A structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Located in mitochondrion. Part of mitochondrial small ribosomal subunit. Orthologous to human MRPS10 (mitochondrial ribosomal protein S10). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
YDR041W	Ribosomal_S10	PF00338	3.3e-33	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	YDR041W_mRNA	612	203aa	YDR041W

Gene Model

Click here to download YDR041W's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download YDR041W's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
YDR041W

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
YDR041W

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003735	enables structural constituent of ribosome	3	IBA,IDA,IEA	Saccharomyces_cerevisiae(559292)	Function
GO:0005739	located_in mitochondrion	3	HDA,IBA,IEA	Saccharomyces_cerevisiae(559292)	Component
GO:0005763	part_of mitochondrial small ribosomal subunit	1	IDA	Saccharomyces_cerevisiae(559292)	Component
GO:0005840	located_in ribosome	1	IEA	Saccharomyces_cerevisiae(559292)	Component
GO:0006412	involved_in translation	1	IEA	Saccharomyces_cerevisiae(559292)	Process
GO:0015935	part_of small ribosomal subunit	1	IBA	Saccharomyces_cerevisiae(559292)	Component
GO:0032543	involved_in mitochondrial translation	1	IC	Saccharomyces_cerevisiae(559292)	Process
GO:1990904	part_of ribonucleoprotein complex	1	IEA	Saccharomyces_cerevisiae(559292)	Component

Expression