RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	WBGene00021638	Gene ID	171916	Accession	-
Symbol	Y47G6A.9	Alias	NA	Full Name	Uncharacterized protein
Status	Confidence	Length	2363 bases	Strand	Plus strand
Position	I : 3479353 - 3481715	RNA binding domain	RNA_pol_3_Rpc31
Summary	Predicted to be involved in transcription by RNA polymerase III. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to several human genes including POLR3G (RNA polymerase III subunit G). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Y47G6A	RNA_pol_3_Rpc31	PF11705	7.4e-18	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Y47G6A.9-201	Y47G6A	1035	221aa	Y47G6A

Gene Model

Click here to download WBGene00021638's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download WBGene00021638's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
WBGene00021638

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
WBGene00021638	caenorhabditis_elegans	Y47G6A.9.1	52.0362	26.2443	chinchilla_lanigera	ENSCLAP00000008753	51.8018	26.1261
WBGene00021638	caenorhabditis_elegans	Y47G6A.9.1	52.9412	25.7919	octodon_degus	ENSODEP00000003212	52.4664	25.5605
WBGene00021638	caenorhabditis_elegans	Y47G6A.9.1	51.1312	25.3394	heterocephalus_glaber_female	ENSHGLP00000060068	16.6913	8.27179
WBGene00021638	caenorhabditis_elegans	Y47G6A.9.1	52.4887	27.6018	cavia_porcellus	ENSCPOP00000031968	52.0179	27.3543
WBGene00021638	caenorhabditis_elegans	Y47G6A.9.1	48.8688	32.1267	cavia_porcellus	ENSCPOP00000032706	49.5413	32.5688

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0005634	located_in nucleus	1	IEA	Caenorhabditis_elegans(6239)	Component
GO:0005666	part_of RNA polymerase III complex	1	IBA	Caenorhabditis_elegans(6239)	Component
GO:0006383	involved_in transcription by RNA polymerase III	1	IEA	Caenorhabditis_elegans(6239)	Process

Expression