Description

Ensembl ID WBGene00009586 Gene ID 179363 Accession -
Symbol F40F9.10 Alias NA Full Name tRNA wybutosine-synthesizing
Status Confidence Length 2186 bases Strand Minus strand
Position V : 9711447 - 9713632 RNA binding domain Met_10
Summary Predicted to enable tRNA methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to be active in cytoplasm. Is expressed in anal depressor muscle; body wall musculature; and pharynx. Orthologous to human TRMT12 (tRNA methyltransferase 12 homolog). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
F40F9 Met_10 PF02475 3.6e-24 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
F40F9.10-201 F40F9 1537 460aa F40F9

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
WBGene00009586caenorhabditis_elegansC53A5.17.123.839712.4473caenorhabditis_elegansF40F9.10.124.565212.8261

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
WBGene00009586caenorhabditis_elegansF40F9.10.139.565223.6957latimeria_chalumnaeENSLACP0000001801140.62524.3304
WBGene00009586caenorhabditis_elegansF40F9.10.140.217423.0435meleagris_gallopavoENSMGAP0000000395643.123524.7086
WBGene00009586caenorhabditis_elegansF40F9.10.134.782620.2174cyclopterus_lumpusENSCLMP0000500637745.454526.4205
WBGene00009586caenorhabditis_elegansF40F9.10.141.304323.2609sphenodon_punctatusENSSPUP0000000701241.942623.6203
WBGene00009586caenorhabditis_elegansF40F9.10.138.043523.2609lepisosteus_oculatusENSLOCP0000001881042.787326.1614
WBGene00009586caenorhabditis_elegansF40F9.10.139.565223.2609ornithorhynchus_anatinusENSOANP0000001583241.176524.2081
WBGene00009586caenorhabditis_elegansF40F9.10.139.782622.6087laticauda_laticaudataENSLLTP0000001814141.402723.5294
WBGene00009586caenorhabditis_elegansF40F9.10.136.521721.7391ciona_intestinalisENSCINP0000003535456.187333.4448
WBGene00009586caenorhabditis_elegansF40F9.10.138.91323.6957oryzias_latipesENSORLP0000000157445.20227.5253
WBGene00009586caenorhabditis_elegansF40F9.10.138.91323.4783danio_rerioENSDARP0000007934943.872526.4706
WBGene00009586caenorhabditis_elegansF40F9.10.138.478321.5217esox_luciusENSELUP0000005222243.170724.1463
WBGene00009586caenorhabditis_elegansF40F9.10.138.260921.5217esox_luciusENSELUP0000006450545.714325.7143
WBGene00009586caenorhabditis_elegansF40F9.10.140.434825.6522ailuropoda_melanoleucaENSAMEP0000002065742.36926.8793
WBGene00009586caenorhabditis_elegansF40F9.10.134.782622.1739ochotona_princepsENSOPRP0000000737635.874422.87
WBGene00009586caenorhabditis_elegansF40F9.10.139.130424.3478ictalurus_punctatusENSIPUP0000002660240.72425.3394
WBGene00009586caenorhabditis_elegansF40F9.10.138.478322.6087gallus_gallusENSGALP0001002340533.459419.6597
WBGene00009586caenorhabditis_elegansF40F9.10.139.130423.4783haplochromis_burtoniENSHBUP0000001455144.887826.9327
WBGene00009586caenorhabditis_elegansF40F9.10.138.91323.4783astatotilapia_callipteraENSACLP0000000141344.638426.9327
WBGene00009586caenorhabditis_elegansF40F9.10.139.782624.7826macaca_fascicularisENSMFAP0000005537841.123625.618
WBGene00009586caenorhabditis_elegansF40F9.10.13521.3043serinus_canariaENSSCAP0000000418039.851524.2574
WBGene00009586caenorhabditis_elegansF40F9.10.137.608722.6087poecilia_reticulataENSPREP0000001721143.2526
WBGene00009586caenorhabditis_elegansF40F9.10.138.478323.6957echinops_telfairiENSETEP0000000761839.597324.3848
WBGene00009586caenorhabditis_elegansF40F9.10.140.217423.4783pseudonaja_textilisENSPTXP0000002760241.0223.9468
WBGene00009586caenorhabditis_elegansF40F9.10.139.782624.7826papio_anubisENSPANP0000004983341.123625.618
WBGene00009586caenorhabditis_elegansF40F9.10.138.91323.913oreochromis_niloticusENSONIP0000000327443.765326.8949
WBGene00009586caenorhabditis_elegansF40F9.10.138.478323.4783parus_majorENSPMJP0000000100430.050918.3362
WBGene00009586caenorhabditis_elegansF40F9.10.139.782624.3478vicugna_pacosENSVPAP0000000605041.123625.1685
WBGene00009586caenorhabditis_elegansF40F9.10.140.652224.3478clupea_harengusENSCHAP0000002073144.418126.6033
WBGene00009586caenorhabditis_elegansF40F9.10.139.347824.5652panthera_leoENSPLOP0000000449935.420722.1135
WBGene00009586caenorhabditis_elegansF40F9.10.140.652224.7826loxodonta_africanaENSLAFP0000001046542.596825.9681
WBGene00009586caenorhabditis_elegansF40F9.10.14024.7826bos_indicus_hybridENSBIXP0000504402739.826824.6753
WBGene00009586caenorhabditis_elegansF40F9.10.140.869623.4783chrysemys_picta_belliiENSCPBP0000001985441.137923.6324
WBGene00009586caenorhabditis_elegansF40F9.10.140.869623.913procavia_capensisENSPCAP0000000050942.152524.6637
WBGene00009586caenorhabditis_elegansF40F9.10.139.565223.6957vulpes_vulpesENSVVUP0000002294540.807224.4395
WBGene00009586caenorhabditis_elegansF40F9.10.14025mus_spretusMGP_SPRETEiJ_P004007241.255625.7848
WBGene00009586caenorhabditis_elegansF40F9.10.139.130423.913octodon_degusENSODEP0000002564941.002325.0569
WBGene00009586caenorhabditis_elegansF40F9.10.138.695723.2609sparus_aurataENSSAUP0001003327243.950626.4198
WBGene00009586caenorhabditis_elegansF40F9.10.130.217418.4783salmo_salarENSSSAP0000008519646.959528.7162
WBGene00009586caenorhabditis_elegansF40F9.10.138.043521.9565sarcophilus_harrisiiENSSHAP0000000380036.842121.2632
WBGene00009586caenorhabditis_elegansF40F9.10.138.260924.7826heterocephalus_glaber_femaleENSHGLP0000005603140.091125.9681
WBGene00009586caenorhabditis_elegansF40F9.10.136.521724.3478cricetulus_griseus_chok1gshdENSCGRP0000101379439.810426.5403
WBGene00009586caenorhabditis_elegansF40F9.10.138.91323.913cavia_porcellusENSCPOP0000002123040.497724.8869
WBGene00009586caenorhabditis_elegansF40F9.10.126.739115.6522lates_calcariferENSLCAP0001003471240.728523.8411
WBGene00009586caenorhabditis_elegansF40F9.10.140.434823.4783erinaceus_europaeusENSEEUP0000000438741.797824.2697
WBGene00009586caenorhabditis_elegansF40F9.10.136.304322.6087camelus_dromedariusENSCDRP0000500604141.645925.9352
WBGene00009586caenorhabditis_elegansF40F9.10.140.434823.6957crocodylus_porosusENSCPRP0000501386441.70424.4395
WBGene00009586caenorhabditis_elegansF40F9.10.138.478323.0435xiphophorus_maculatusENSXMAP0000003757544.139726.4339
WBGene00009586caenorhabditis_elegansF40F9.10.140.434823.913oryzias_melastigmaENSOMEP0000003081246.38427.4314
WBGene00009586caenorhabditis_elegansF40F9.10.141.08725.4348erpetoichthys_calabaricusENSECRP0000001873243.150726.7123
WBGene00009586caenorhabditis_elegansF40F9.10.139.130423.913urocitellus_parryiiENSUPAP0001001104041.284425.2294
WBGene00009586caenorhabditis_elegansF40F9.10.140.434825.2174mus_pahariMGP_PahariEiJ_P004165441.70426.009
WBGene00009586caenorhabditis_elegansF40F9.10.138.478323.2609neolamprologus_brichardiENSNBRP0000002823444.810127.0886
WBGene00009586caenorhabditis_elegansF40F9.10.14024.7826bos_grunniensENSBGRP0000002207038.655523.9496
WBGene00009586caenorhabditis_elegansF40F9.10.139.782625mus_spicilegusENSMSIP0000001799841.031425.7848
WBGene00009586caenorhabditis_elegansF40F9.10.140.434824.7826ovis_aries_rambouilletENSOARP0002001579042.562926.087
WBGene00009586caenorhabditis_elegansF40F9.10.138.260922.6087xenopus_tropicalisENSXETP0000002122943.137325.4902
WBGene00009586caenorhabditis_elegansF40F9.10.14024.7826takifugu_rubripesENSTRUP0000002916942.009126.0274
WBGene00009586caenorhabditis_elegansF40F9.10.138.91324.1304cyprinodon_variegatusENSCVAP0000002273144.7527.75
WBGene00009586caenorhabditis_elegansF40F9.10.134.782620.4348ciona_savignyiENSCSAVP0000000073855.363332.526
WBGene00009586caenorhabditis_elegansF40F9.10.132.391320.6522ficedula_albicollisENSFALP0000001847729.388618.7377
WBGene00009586caenorhabditis_elegansF40F9.10.139.782625.8696pygocentrus_nattereriENSPNAP0000001319343.467928.266
WBGene00009586caenorhabditis_elegansF40F9.10.140.217425myotis_lucifugusENSMLUP0000000341742.141226.1959
WBGene00009586caenorhabditis_elegansF40F9.10.139.782623.913phocoena_sinusENSPSNP0000001796041.685625.0569
WBGene00009586caenorhabditis_elegansF40F9.10.139.782624.5652bison_bison_bisonENSBBBP0000002471540.939625.2796
WBGene00009586caenorhabditis_elegansF40F9.10.129.565217.1739pelodiscus_sinensisENSPSIP0000000365250.184529.1513
WBGene00009586caenorhabditis_elegansF40F9.10.138.478323.4783oryzias_javanicusENSOJAP0000002843544.923927.4112
WBGene00009586caenorhabditis_elegansF40F9.10.140.434825.4348astyanax_mexicanusENSAMXP0000003427944.075827.7251
WBGene00009586caenorhabditis_elegansF40F9.10.14024.7826callithrix_jacchusENSCJAP0000004083041.071425.4464
WBGene00009586caenorhabditis_elegansF40F9.10.139.347823.913kryptolebias_marmoratusENSKMAP0000000113746.891228.4974
WBGene00009586caenorhabditis_elegansF40F9.10.139.347824.5652electrophorus_electricusENSEEEP0000003554643.198126.969
WBGene00009586caenorhabditis_elegansF40F9.10.138.695722.8261tetraodon_nigroviridisENSTNIP0000001997943.414625.6098
WBGene00009586caenorhabditis_elegansF40F9.10.140.217424.5652capra_hircusENSCHIP0000001625142.237425.7991
WBGene00009586caenorhabditis_elegansF40F9.10.140.869623.6957sinocyclocheilus_grahamiENSSGRP0000003992345.631126.4563
WBGene00009586caenorhabditis_elegansF40F9.10.137.826121.3043sinocyclocheilus_grahamiENSSGRP0000004169044.961225.323
WBGene00009586caenorhabditis_elegansF40F9.10.139.347823.913maylandia_zebraENSMZEP0000500970645.137227.4314
WBGene00009586caenorhabditis_elegansF40F9.10.14024.7826bos_mutusENSBMUP0000003271439.826824.6753
WBGene00009586caenorhabditis_elegansF40F9.10.14024.1304catagonus_wagneriENSCWAP0000002286542.494225.6351
WBGene00009586caenorhabditis_elegansF40F9.10.140.652224.7826seriola_dumeriliENSSDUP0000000845946.633428.4289
WBGene00009586caenorhabditis_elegansF40F9.10.140.217424.7826cervus_hanglu_yarkandensisENSCHYP0000003995640.39324.8908
WBGene00009586caenorhabditis_elegansF40F9.10.138.91322.3913phascolarctos_cinereusENSPCIP0000000361337.923721.822
WBGene00009586caenorhabditis_elegansF40F9.10.139.782624.7826macaca_mulattaENSMMUP0000003194641.123625.618
WBGene00009586caenorhabditis_elegansF40F9.10.137.608722.3913poecilia_formosaENSPFOP0000001700942.92825.5583
WBGene00009586caenorhabditis_elegansF40F9.10.139.782624.7826scophthalmus_maximusENSSMAP0000002163545.979928.6432
WBGene00009586caenorhabditis_elegansF40F9.10.133.260920.6522fundulus_heteroclitusENSFHEP0000001570841.576125.8152
WBGene00009586caenorhabditis_elegansF40F9.10.140.434825mustela_putorius_furoENSMPUP0000001902741.70425.7848
WBGene00009586caenorhabditis_elegansF40F9.10.139.130423.4783carassius_auratusENSCARP0000010716245.112827.0677
WBGene00009586caenorhabditis_elegansF40F9.10.14024.7826bos_taurusENSBTAP0000002718639.826824.6753
WBGene00009586caenorhabditis_elegansF40F9.10.140.217425.2174moschus_moschiferusENSMMSP0000002294740.043325.1082
WBGene00009586caenorhabditis_elegansF40F9.10.140.217424.5652anabas_testudineusENSATEP0000002642845.67927.9012
WBGene00009586caenorhabditis_elegansF40F9.10.140.869623.6957cynoglossus_semilaevisENSCSEP0000000410443.925225.4673
WBGene00009586caenorhabditis_elegansF40F9.10.138.695722.1739vombatus_ursinusENSVURP0001000493840.271523.0769
WBGene00009586caenorhabditis_elegansF40F9.10.140.652225nannospalax_galiliENSNGAP0000001279042.694126.2557
WBGene00009586caenorhabditis_elegansF40F9.10.135.434822.6087oryctolagus_cuniculusENSOCUP0000001682941.581626.5306
WBGene00009586caenorhabditis_elegansF40F9.10.138.043522.6087amphilophus_citrinellusENSACIP0000001667246.296327.5132
WBGene00009586caenorhabditis_elegansF40F9.10.136.956523.6957hippocampus_comesENSHCOP0000000366243.367327.8061
WBGene00009586caenorhabditis_elegansF40F9.10.138.91324.3478scleropages_formosusENSSFOP0001500936542.925726.8585
WBGene00009586caenorhabditis_elegansF40F9.10.138.043523.6957amphiprion_ocellarisENSAOCP0000001572544.416227.665
WBGene00009586caenorhabditis_elegansF40F9.10.138.260921.9565monodelphis_domesticaENSMODP0000002673938.51222.1007
WBGene00009586caenorhabditis_elegansF40F9.10.137.608722.3913monodelphis_domesticaENSMODP0000001478036.497921.73
WBGene00009586caenorhabditis_elegansF40F9.10.136.521723.4783callorhinchus_miliiENSCMIP0000000744840.776726.2136
WBGene00009586caenorhabditis_elegansF40F9.10.140.652223.2609gopherus_evgoodeiENSGEVP0000501966142.117124.0991
WBGene00009586caenorhabditis_elegansF40F9.10.14025.4348mus_caroliMGP_CAROLIEiJ_P003828141.255626.2332
WBGene00009586caenorhabditis_elegansF40F9.10.139.130423.913ictidomys_tridecemlineatusENSSTOP0000003156540.816324.9433
WBGene00009586caenorhabditis_elegansF40F9.10.139.782624.5652pongo_abeliiENSPPYP0000002116740.848225.2232
WBGene00009586caenorhabditis_elegansF40F9.10.14023.4783nothobranchius_furzeriENSNFUP0001500222446.231227.1357
WBGene00009586caenorhabditis_elegansF40F9.10.140.869625denticeps_clupeoidesENSDCDP0000003301846.419828.3951
WBGene00009586caenorhabditis_elegansF40F9.10.138.91323.0435aquila_chrysaetos_chrysaetosENSACCP0002002412542.21725
WBGene00009586caenorhabditis_elegansF40F9.10.140.217423.4783strigops_habroptilaENSSHBP0000502452829.69517.3355
WBGene00009586caenorhabditis_elegansF40F9.10.138.478323.4783betta_splendensENSBSLP0000004767043.703726.6667
WBGene00009586caenorhabditis_elegansF40F9.10.136.521721.087gasterosteus_aculeatusENSGACP0000002292245.528526.2873
WBGene00009586caenorhabditis_elegansF40F9.10.138.695723.2609acanthochromis_polyacanthusENSAPOP0000000967044.38926.6833
WBGene00009586caenorhabditis_elegansF40F9.10.138.043522.6087poecilia_latipinnaENSPLAP0000001642443.7526
WBGene00009586caenorhabditis_elegansF40F9.10.140.217425.8696rattus_norvegicusENSRNOP0000001187442.334127.2311
WBGene00009586caenorhabditis_elegansF40F9.10.14025peromyscus_maniculatus_bairdiiENSPEMP0000003338441.913426.1959
WBGene00009586caenorhabditis_elegansF40F9.10.140.217424.1304struthio_camelus_australisENSSCUP0000002223639.529923.7179
WBGene00009586caenorhabditis_elegansF40F9.10.140.434825.2174neovison_visonENSNVIP0000000222342.36926.4237
WBGene00009586caenorhabditis_elegansF40F9.10.140.217424.5652sander_luciopercaENSSLUP0000005221045.792127.9703
WBGene00009586caenorhabditis_elegansF40F9.10.128.043513.6957saccharomyces_cerevisiaeYML005W27.922113.6364
WBGene00009586caenorhabditis_elegansF40F9.10.140.217423.2609notechis_scutatusENSNSUP0000000370841.0223.7251
WBGene00009586caenorhabditis_elegansF40F9.10.137.608722.8261pundamilia_nyerereiENSPNYP0000001409145.767227.7778
WBGene00009586caenorhabditis_elegansF40F9.10.140.217425.4348ursus_americanusENSUAMP0000000224042.431226.8349
WBGene00009586caenorhabditis_elegansF40F9.10.139.782624.5652chlorocebus_sabaeusENSCSAP0000001814840.848225.2232
WBGene00009586caenorhabditis_elegansF40F9.10.139.130424.1304canis_lupus_dingoENSCAFP0002000802941.002325.2847
WBGene00009586caenorhabditis_elegansF40F9.10.140.434825.2174leptobrachium_leishanenseENSLLEP0000002311144.285727.619
WBGene00009586caenorhabditis_elegansF40F9.10.137.173924.3478paramormyrops_kingsleyaeENSPKIP0000001951542.222227.6543
WBGene00009586caenorhabditis_elegansF40F9.10.139.347824.1304myripristis_murdjanENSMMDP0000504168644.691427.4074
WBGene00009586caenorhabditis_elegansF40F9.10.138.91323.2609coturnix_japonicaENSCJPP0000502033241.724924.9417
WBGene00009586caenorhabditis_elegansF40F9.10.139.782623.4783larimichthys_croceaENSLCRP0000500939945.185226.6667
WBGene00009586caenorhabditis_elegansF40F9.10.138.695722.8261oryzias_sinensisENSOSIP0000004613745.292626.7176
WBGene00009586caenorhabditis_elegansF40F9.10.137.173923.2609labrus_bergyltaENSLBEP0000003850643.958927.5064
WBGene00009586caenorhabditis_elegansF40F9.10.125.217416.087labrus_bergyltaENSLBEP0000002276647.154530.0813
WBGene00009586caenorhabditis_elegansF40F9.10.139.130422.6087stegastes_partitusENSSPAP0000001241943.478325.1208
WBGene00009586caenorhabditis_elegansF40F9.10.139.782624.5652homo_sapiensENSP0000032985840.848225.2232
WBGene00009586caenorhabditis_elegansF40F9.10.140.217422.8261podarcis_muralisENSPMRP0000002962441.760723.702
WBGene00009586caenorhabditis_elegansF40F9.10.141.08724.1304mastacembelus_armatusENSMAMP0000003013346.551727.3399
WBGene00009586caenorhabditis_elegansF40F9.10.14024.3478sciurus_vulgarisENSSVLP0000501484841.913425.5125
WBGene00009586caenorhabditis_elegansF40F9.10.137.391323.4783taeniopygia_guttataENSTGUP0000003545127.172217.0616
WBGene00009586caenorhabditis_elegansF40F9.10.141.08723.4783terrapene_carolina_triunguisENSTMTP0000002237241.356723.6324
WBGene00009586caenorhabditis_elegansF40F9.10.140.652224.7826pteropus_vampyrusENSPVAP0000000862842.022525.618
WBGene00009586caenorhabditis_elegansF40F9.10.14025mus_musculusENSMUSP0000004783141.255625.7848
WBGene00009586caenorhabditis_elegansF40F9.10.141.956523.4783salvator_merianaeENSSMRP0000001700843.863624.5455
WBGene00009586caenorhabditis_elegansF40F9.10.138.260923.2609amphiprion_perculaENSAPEP0000000883744.670127.1574
WBGene00009586caenorhabditis_elegansF40F9.10.128.043515cyprinus_carpio_carpioENSCCRP0000009377040.69421.7666
WBGene00009586caenorhabditis_elegansF40F9.10.141.08723.913cyprinus_carpio_carpioENSCCRP0000013550945.873826.699
WBGene00009586caenorhabditis_elegansF40F9.10.140.652223.913cottoperca_gobioENSCGOP0000004096643.187125.4042
WBGene00009586caenorhabditis_elegansF40F9.10.141.08724.5652seriola_lalandi_dorsalisENSSLDP0000003258246.666727.9012
WBGene00009586caenorhabditis_elegansF40F9.10.134.782619.7826anser_brachyrhynchusENSABRP0000001322037.383221.2617
WBGene00009586caenorhabditis_elegansF40F9.10.140.434823.913otolemur_garnettiiENSOGAP0000001419542.36925.0569

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005737is_active_in cytoplasm1IBACaenorhabditis_elegans(6239)Component
GO:0006400involved_in tRNA modification1IEACaenorhabditis_elegans(6239)Process
GO:0008175enables tRNA methyltransferase activity1IBACaenorhabditis_elegans(6239)Function
GO:0016740enables transferase activity1IEACaenorhabditis_elegans(6239)Function
GO:0030488involved_in tRNA methylation1IBACaenorhabditis_elegans(6239)Process
GO:0031591involved_in wybutosine biosynthetic process1IBACaenorhabditis_elegans(6239)Process
GO:0102522enables tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity1IEACaenorhabditis_elegans(6239)Function

Expression