Description

Ensembl ID WBGene00004323 Gene ID 179393 Accession -
Symbol rde-1 Alias NA Full Name Piwi domain-containing protein
Status Confidence Length 3727 bases Strand Minus strand
Position V : 9987916 - 9991642 RNA binding domain Piwi
Summary Enables DEAD/H-box RNA helicase binding activity; endoribonuclease activity, producing 5'-phosphomonoesters; and siRNA binding activity. Involved in conversion of ds siRNA to ss siRNA involved in RNA interference and heterochromatin assembly by small RNA. Part of RISC complex. [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
K08H10 Piwi PF02171 7.7e-63 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
rde-1-201 K08H10 3218 1020aa K08H10

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
WBGene00004323

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
WBGene00004323

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003676enables nucleic acid binding1IEACaenorhabditis_elegans(6239)Function
GO:0003727enables single-stranded RNA binding1IBACaenorhabditis_elegans(6239)Function
GO:0004521enables RNA endonuclease activity1IBACaenorhabditis_elegans(6239)Function
GO:0005515enables protein binding1IPICaenorhabditis_elegans(6239)Function
GO:0016442part_of RISC complex1IDACaenorhabditis_elegans(6239)Component
GO:0016891enables RNA endonuclease activity, producing 5-phosphomonoesters1IMPCaenorhabditis_elegans(6239)Function
GO:0017151enables DEAD/H-box RNA helicase binding1IPICaenorhabditis_elegans(6239)Function
GO:0031048involved_in regulatory ncRNA-mediated heterochromatin formation1IMPCaenorhabditis_elegans(6239)Process
GO:0035194involved_in regulatory ncRNA-mediated post-transcriptional gene silencing1IMPCaenorhabditis_elegans(6239)Process
GO:0035197enables siRNA binding1IDACaenorhabditis_elegans(6239)Function
GO:0035198enables miRNA binding1IBACaenorhabditis_elegans(6239)Function

Expression