RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	WBGene00000479	Gene ID	176061	Accession	-
Symbol	cgh-1	Alias	NA	Full Name	ATP-dependent RNA helicase cgh-1
Status	Confidence	Length	2513 bases	Strand	Minus strand
Position	III : 7495320 - 7497832	RNA binding domain	DEAD
Summary	Predicted to enable RNA helicase activity and mRNA binding activity. Involved in several processes, including P-body assembly; determination of adult lifespan; and negative regulation of translation. Located in P granule; P-body; and cytoplasmic stress granule. Part of messenger ribonucleoprotein complex. Is expressed in several structures, including Z2; Z3; germ line; gonad; and neurons. Orthologous to human DDX6 (DEAD-box helicase 6). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

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Protein	Domain	Pfam ID	E-value	Domain number
C07H6	DEAD	PF00270	4.6e-43	1

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Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
cgh-1-201	C07H6	2273	430aa	C07H6

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Gene Model

Click here to download WBGene00000479's gene model file

Protein-Protein Interaction (PPI)

Click here to download WBGene00000479's PPI file

Paralogs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
WBGene00000479	caenorhabditis_elegans	C26D10.2a.1	43.2941	25.8824	caenorhabditis_elegans	C07H6.5.1	42.7907	25.5814
WBGene00000479	caenorhabditis_elegans	C55B7.1.1	18.3778	9.95893	caenorhabditis_elegans	C07H6.5.1	41.6279	22.5581
WBGene00000479	caenorhabditis_elegans	T21G5.3.1	23.46	12.713	caenorhabditis_elegans	C07H6.5.1	41.6279	22.5581
WBGene00000479	caenorhabditis_elegans	B0414.6.1	25.1389	14.4444	caenorhabditis_elegans	C07H6.5.1	42.093	24.186
WBGene00000479	caenorhabditis_elegans	Y38A10A.6.1	30.9615	15.7692	caenorhabditis_elegans	C07H6.5.1	37.4419	19.0698
WBGene00000479	caenorhabditis_elegans	C14C11.6.1	30.6818	15.7197	caenorhabditis_elegans	C07H6.5.1	37.6744	19.3023
WBGene00000479	caenorhabditis_elegans	F57B9.6a.1	50.2488	31.592	caenorhabditis_elegans	C07H6.5.1	46.9767	29.5349
WBGene00000479	caenorhabditis_elegans	Y94H6A.5a.1	22.1818	12	caenorhabditis_elegans	C07H6.5.1	42.5581	23.0233
WBGene00000479	caenorhabditis_elegans	ZK686.2.1	29.0051	14.8398	caenorhabditis_elegans	C07H6.5.1	40	20.4651
WBGene00000479	caenorhabditis_elegans	Y71G12B.8.1	25.5751	15.1556	caenorhabditis_elegans	C07H6.5.1	43.9535	26.0465

Showing 1 to 10 of 30 entries

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Orthologs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
WBGene00000479	caenorhabditis_elegans	C07H6.5.1	81.1628	68.8372	ciona_intestinalis	ENSCINP00000015240	80.2299	68.046
WBGene00000479	caenorhabditis_elegans	C07H6.5.1	85.3488	74.186	drosophila_melanogaster	FBpp0079565	79.9564	69.4989
WBGene00000479	caenorhabditis_elegans	C07H6.5.1	76.0465	58.1395	cervus_hanglu_yarkandensis	ENSCHYP00000018388	69.7228	53.3049
WBGene00000479	caenorhabditis_elegans	C07H6.5.1	77.907	63.9535	saccharomyces_cerevisiae	YDL160C	66.2055	54.3478

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Gene Ontology

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Go ID	Go term	No. evidence	Entries	Species	Category
GO:0000932	is_active_in P-body	2	IBA,IDA	Caenorhabditis_elegans(6239)	Component
GO:0003724	enables RNA helicase activity	2	IEA,ISS	Caenorhabditis_elegans(6239)	Function
GO:0010494	is_active_in cytoplasmic stress granule	2	IBA,IDA	Caenorhabditis_elegans(6239)	Component
GO:0016071	involved_in mRNA metabolic process	2	IMP,TAS	Caenorhabditis_elegans(6239)	Process
GO:0017148	involved_in negative regulation of translation	2	IBA,IMP	Caenorhabditis_elegans(6239)	Process
GO:0033962	involved_in P-body assembly	2	IBA,IMP	Caenorhabditis_elegans(6239)	Process
GO:0043186	located_in P granule	2	IDA,IEA	Caenorhabditis_elegans(6239)	Component
GO:0000166	enables nucleotide binding	1	IEA	Caenorhabditis_elegans(6239)	Function
GO:0003676	enables nucleic acid binding	1	IEA	Caenorhabditis_elegans(6239)	Function
GO:0003723	enables RNA binding	1	IEA	Caenorhabditis_elegans(6239)	Function

Showing 1 to 10 of 28 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs
Gene Ontology