RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Vitvi12g04536	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Vitvi12g04536
Status	Confidence	Length	11277 bases	Strand	Minus strand
Position	12 : 19949546 - 19960822	RNA binding domain	Beta-Casp , CPSF73-100_C , RMMBL
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Vitvi12g04536_P001	Beta-Casp	PF10996	1.3e-14	1
Vitvi12g04536_P001	CPSF73-100_C	PF11718	4.4e-46	2
Vitvi12g04536_P001	RMMBL	PF07521	2.8e-14	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Vitvi12g04536_t001	2082	693aa	Vitvi12g04536_P001

Gene Model

Click here to download Vitvi12g04536's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Vitvi12g04536's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Vitvi12g04536

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Vitvi12g04536

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression