Description

Ensembl ID Vitvi12g01937 Gene ID Accession -
Symbol Alias - Full Name Vitvi12g01937
Status Confidence Length 6856 bases Strand Minus strand
Position 12 : 19910753 - 19917608 RNA binding domain Lactamase_B , Beta-Casp , CPSF73-100_C , RMMBL
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
Vitvi12g01937_P001 Lactamase_B PF00753 1.4e-21 1
Vitvi12g01937_P001 Beta-Casp PF10996 1.5e-26 2
Vitvi12g01937_P001 CPSF73-100_C PF11718 4.1e-45 3
Vitvi12g01937_P001 RMMBL PF07521 2.8e-14 4
Vitvi12g01937_P002 Lactamase_B PF00753 1.4e-21 1
Vitvi12g01937_P002 Beta-Casp PF10996 1.5e-26 2
Vitvi12g01937_P002 CPSF73-100_C PF11718 4.1e-45 3
Vitvi12g01937_P002 RMMBL PF07521 2.8e-14 4
Vitvi12g01937_P003 Lactamase_B PF00753 3.6e-07 1
Vitvi12g01937_P003 Beta-Casp PF10996 1.2e-26 2
Vitvi12g01937_P003 CPSF73-100_C PF11718 3.2e-45 3
Vitvi12g01937_P003 RMMBL PF07521 2.4e-14 4
Vitvi12g01937_P004 Lactamase_B PF00753 3.6e-07 1
Vitvi12g01937_P004 Beta-Casp PF10996 1.2e-26 2
Vitvi12g01937_P004 CPSF73-100_C PF11718 3.2e-45 3
Vitvi12g01937_P004 RMMBL PF07521 2.4e-14 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- Vitvi12g01937_t004 2451 629aa Vitvi12g01937_P004
- Vitvi12g01937_t002 2549 693aa Vitvi12g01937_P002
- Vitvi12g01937_t001 2413 693aa Vitvi12g01937_P001
- Vitvi12g01937_t003 2315 629aa Vitvi12g01937_P003

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
Vitvi12g01937

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
Vitvi12g01937

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression