Description

Ensembl ID TraesTSP5D01G540800 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 8272 bases Strand Plus strand
Position 5D : 537335010 - 537343281 RNA binding domain RNA_pol_Rpb1_4 , RNA_pol_Rpb1_1 , RNA_pol_Rpb1_5 , RNA_pol_Rpb1_2 , RNA_pol_Rpb1_3 , RNA_pol_Rpb1_6 , RNA_pol_Rpb1_7
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
TraesTSP5D01G540800 RNA_pol_Rpb1_4 PF05000 2.3e-39 1
TraesTSP5D01G540800 RNA_pol_Rpb1_1 PF04997 3.9e-114 2
TraesTSP5D01G540800 RNA_pol_Rpb1_5 PF04998 3.6e-104 3
TraesTSP5D01G540800 RNA_pol_Rpb1_2 PF00623 8.7e-72 4
TraesTSP5D01G540800 RNA_pol_Rpb1_3 PF04983 3.6e-48 5
TraesTSP5D01G540800 RNA_pol_Rpb1_6 PF04992 5e-63 6
TraesTSP5D01G540800 RNA_pol_Rpb1_7 PF04990 1.1e-50 7

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- TraesTSP5D01G540800.1 5493 1830aa TraesTSP5D01G540800.1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TraesTSP5D01G540800

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TraesTSP5D01G540800

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression