RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	TraesKAR4A01G0378650	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	3871 bases	Strand	Plus strand
Position	4A : 614413912 - 614417782	RNA binding domain	Lactamase_B , Beta-Casp , CPSF73-100_C , RMMBL
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
cds	Lactamase_B	PF00753	1.3e-19	1
cds	Beta-Casp	PF10996	8.5e-28	2
cds	CPSF73-100_C	PF11718	2e-47	3
cds	RMMBL	PF07521	1.8e-13	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	TraesKAR4A01G0378650.1	2662	692aa	cds.TraesKAR4A01G0378650.1

Gene Model

Click here to download TraesKAR4A01G0378650's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download TraesKAR4A01G0378650's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
TraesKAR4A01G0378650

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
TraesKAR4A01G0378650

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression