Description

Ensembl ID TraesCS5A02G453700 Gene ID Accession -
Symbol Alias - Full Name Cleavage and polyadenylation specificity factor subunit 2
Status Confidence Length 6966 bases Strand Minus strand
Position 5A : 635269596 - 635276561 RNA binding domain Lactamase_B , Beta-Casp , RMMBL
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
TraesCS5A02G453700 Lactamase_B PF00753 4.6e-05 1
TraesCS5A02G453700 Lactamase_B PF00753 0.0001 2
TraesCS5A02G453700 Lactamase_B PF00753 0.00011 3
TraesCS5A02G453700 Lactamase_B PF00753 0.00012 4
TraesCS5A02G453700 Beta-Casp PF10996 2.2e-20 5
TraesCS5A02G453700 Beta-Casp PF10996 5.1e-19 6
TraesCS5A02G453700 Beta-Casp PF10996 5.1e-19 7
TraesCS5A02G453700 Beta-Casp PF10996 6.5e-19 8
TraesCS5A02G453700 Beta-Casp PF10996 6.5e-19 9
TraesCS5A02G453700 Beta-Casp PF10996 6.5e-19 10
TraesCS5A02G453700 RMMBL PF07521 2.6e-12 11
TraesCS5A02G453700 RMMBL PF07521 2.6e-12 12
TraesCS5A02G453700 RMMBL PF07521 2.8e-12 13
TraesCS5A02G453700 RMMBL PF07521 2.8e-12 14

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- TraesCS5A02G453700.4 2668 738aa TraesCS5A02G453700.4
- TraesCS5A02G453700.5 2671 739aa TraesCS5A02G453700.5
- TraesCS5A02G453700.2 2503 683aa TraesCS5A02G453700.2
- TraesCS5A02G453700.3 2506 684aa TraesCS5A02G453700.3
- TraesCS5A02G453700.1 2638 728aa TraesCS5A02G453700.1
- TraesCS5A02G453700.6 1533 468aa TraesCS5A02G453700.6

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TraesCS5A02G453700

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TraesCS5A02G453700

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression