RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	TraesCS5A02G203800	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Cleavage and polyadenylation specificity factor subunit 3-II
Status	Confidence	Length	5355 bases	Strand	Minus strand
Position	5A : 413222701 - 413228055	RNA binding domain	Lactamase_B , Beta-Casp , RMMBL
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
TraesCS5A02G203800	Lactamase_B	PF00753	1.8e-06	1
TraesCS5A02G203800	Beta-Casp	PF10996	4.7e-23	2
TraesCS5A02G203800	RMMBL	PF07521	1.4e-13	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	TraesCS5A02G203800.1	2124	552aa	TraesCS5A02G203800.1

Gene Model

Click here to download TraesCS5A02G203800's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download TraesCS5A02G203800's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
TraesCS5A02G203800

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
TraesCS5A02G203800

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression