RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	TraesCS2A02G246200	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Proline--tRNA ligase, chloroplastic/mitochondrial
Status	Confidence	Length	8517 bases	Strand	Minus strand
Position	2A : 360428438 - 360436954	RNA binding domain	ProRS-C_1 , HGTP_anticodon , tRNA-synt_2b
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
TraesCS2A02G246200	ProRS-C_1	PF09180	8.9e-18	1
TraesCS2A02G246200	HGTP_anticodon	PF03129	2.1e-14	2
TraesCS2A02G246200	tRNA-synt_2b	PF00587	8.4e-19	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	TraesCS2A02G246200.1	1944	541aa	TraesCS2A02G246200.1

Gene Model

Click here to download TraesCS2A02G246200's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download TraesCS2A02G246200's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
TraesCS2A02G246200

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
TraesCS2A02G246200

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression