Description

Ensembl ID TraesCS1A02G185900 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 9781 bases Strand Minus strand
Position 1A : 337007361 - 337017141 RNA binding domain RRM_1 , Surp , cwf21 , CID
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
TraesCS1A02G185900 RRM_1 PF00076 2.7e-10 1
TraesCS1A02G185900 RRM_1 PF00076 2.8e-10 2
TraesCS1A02G185900 RRM_1 PF00076 3.1e-10 3
TraesCS1A02G185900 RRM_1 PF00076 3.2e-10 4
TraesCS1A02G185900 RRM_1 PF00076 3.2e-10 5
TraesCS1A02G185900 RRM_1 PF00076 3.2e-10 6
TraesCS1A02G185900 RRM_1 PF00076 4.5e-09 7
TraesCS1A02G185900 Surp PF01805 4.5e-14 8
TraesCS1A02G185900 Surp PF01805 5.1e-14 9
TraesCS1A02G185900 Surp PF01805 5.7e-14 10
TraesCS1A02G185900 Surp PF01805 5.7e-14 11
TraesCS1A02G185900 Surp PF01805 7.1e-14 12
TraesCS1A02G185900 Surp PF01805 7.2e-14 13
TraesCS1A02G185900 Surp PF01805 7.2e-14 14
TraesCS1A02G185900 cwf21 PF08312 5.5e-07 15
TraesCS1A02G185900 cwf21 PF08312 6.1e-07 16
TraesCS1A02G185900 cwf21 PF08312 6.3e-07 17
TraesCS1A02G185900 cwf21 PF08312 6.4e-07 18
TraesCS1A02G185900 cwf21 PF08312 6.4e-07 19
TraesCS1A02G185900 CID PF04818 1.4e-07 20
TraesCS1A02G185900 CID PF04818 1.4e-07 21
TraesCS1A02G185900 CID PF04818 1.4e-07 22
TraesCS1A02G185900 CID PF04818 1.5e-07 23
TraesCS1A02G185900 CID PF04818 1.6e-07 24
TraesCS1A02G185900 CID PF04818 1.6e-07 25
TraesCS1A02G185900 CID PF04818 1.6e-07 26

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- TraesCS1A02G185900.6 4083 840aa TraesCS1A02G185900.6
- TraesCS1A02G185900.2 3472 839aa TraesCS1A02G185900.2
- TraesCS1A02G185900.4 4118 935aa TraesCS1A02G185900.4
- TraesCS1A02G185900.7 2736 805aa TraesCS1A02G185900.7
- TraesCS1A02G185900.5 4117 948aa TraesCS1A02G185900.5
- TraesCS1A02G185900.1 4120 949aa TraesCS1A02G185900.1
- TraesCS1A02G185900.3 3685 910aa TraesCS1A02G185900.3

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TraesCS1A02G185900

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TraesCS1A02G185900

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression