RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	Tp57577_TGAC_v2_gene3104	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Probable CCR4-associated factor 1 homolog 10
Status	Confidence	Length	1534 bases	Strand	Minus strand
Position	LG7 : 11502859 - 11504392	RNA binding domain	CAF1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Tp57577_TGAC_v2_mRNA3194	CAF1	PF04857	3.5e-18	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Tp57577_TGAC_v2_mRNA3194	1285	299aa	Tp57577_TGAC_v2_mRNA3194

Gene Model

Click here to download Tp57577_TGAC_v2_gene3104's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Tp57577_TGAC_v2_gene3104's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Tp57577_TGAC_v2_gene3104

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Tp57577_TGAC_v2_gene3104

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression