RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Tc08v2_g004980	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Pre-rRNA-processing protein TSR1 isoform 1
Status	Confidence	Length	6550 bases	Strand	Minus strand
Position	VIII : 2611490 - 2618039	RNA binding domain	AARP2CN
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Tc08v2_p004980	AARP2CN	PF08142	9.3e-21	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Tc08v2_t004980.1	2984	798aa	Tc08v2_p004980.1

Gene Model

Click here to download Tc08v2_g004980's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Tc08v2_g004980's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Tc08v2_g004980

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Tc08v2_g004980

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression