RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Tc05v2_g005720	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Histidine--tRNA ligase, chloroplastic/mitochondrial
Status	Confidence	Length	2876 bases	Strand	Plus strand
Position	V : 3263875 - 3266750	RNA binding domain	tRNA-synt_2d , tRNA-synt_His , tRNA-synt_2b
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Tc05v2_p005720	tRNA-synt_2d	PF01409	3e-05	1
Tc05v2_p005720	tRNA-synt_His	PF13393	3.8e-25	2
Tc05v2_p005720	tRNA-synt_2b	PF00587	5.1e-11	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Tc05v2_t005720.1	1202	323aa	Tc05v2_p005720.1

Gene Model

Click here to download Tc05v2_g005720's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Tc05v2_g005720's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Tc05v2_g005720

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Tc05v2_g005720

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression