RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	Tc04v2_g016010	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Phenylalanine--tRNA ligase, chloroplastic/mitochondrial
Status	Confidence	Length	6145 bases	Strand	Minus strand
Position	IV : 25936992 - 25943136	RNA binding domain	FDX-ACB , tRNA-synt_2d
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Tc04v2_p016010	FDX-ACB	PF03147	1.5e-25	1
Tc04v2_p016010	tRNA-synt_2d	PF01409	1.6e-47	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Tc04v2_t016010.1	1718	428aa	Tc04v2_p016010.1

Gene Model

Click here to download Tc04v2_g016010's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Tc04v2_g016010's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Tc04v2_g016010

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Tc04v2_g016010

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression