RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Tc01v2_g027190	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Proline--tRNA ligase, cytoplasmic
Status	Confidence	Length	5599 bases	Strand	Plus strand
Position	I : 32646628 - 32652226	RNA binding domain	ProRS-C_1 , HGTP_anticodon , tRNA-synt_2b
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Tc01v2_p027190	ProRS-C_1	PF09180	6.6e-28	1
Tc01v2_p027190	HGTP_anticodon	PF03129	2.2e-16	2
Tc01v2_p027190	tRNA-synt_2b	PF00587	2e-17	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Tc01v2_t027190.1	2032	507aa	Tc01v2_p027190.1

Gene Model

Click here to download Tc01v2_g027190's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Tc01v2_g027190's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Tc01v2_g027190

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Tc01v2_g027190

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression