RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Tc01v2_g012720	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Ribosome biogenesis protein BOP1 homolog
Status	Confidence	Length	5056 bases	Strand	Plus strand
Position	I : 8723563 - 8728618	RNA binding domain	BOP1NT
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Tc01v2_p012720	BOP1NT	PF08145	2.7e-101	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Tc01v2_t012720.1	2315	673aa	Tc01v2_p012720.1

Gene Model

Click here to download Tc01v2_g012720's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Tc01v2_g012720's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Tc01v2_g012720

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Tc01v2_g012720

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression