Description

Ensembl ID TRITD7Av1G169530 Gene ID Accession -
Symbol Alias - Full Name DNA-directed RNA polymerase subunit beta
Status Confidence Length 7868 bases Strand Plus strand
Position 7A : 459231946 - 459239813 RNA binding domain RNA_pol_Rpb2_1 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6 , RNA_pol_Rpb2_4 , RNA_pol_Rpb2_5
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
TRITD7Av1G169530 RNA_pol_Rpb2_1 PF04563 1.2e-27 1
TRITD7Av1G169530 RNA_pol_Rpb2_1 PF04563 1.7e-27 2
TRITD7Av1G169530 RNA_pol_Rpb2_3 PF04565 4.4e-12 3
TRITD7Av1G169530 RNA_pol_Rpb2_3 PF04565 5.1e-12 4
TRITD7Av1G169530 RNA_pol_Rpb2_7 PF04560 7.9e-28 5
TRITD7Av1G169530 RNA_pol_Rpb2_7 PF04560 1.8e-27 6
TRITD7Av1G169530 RNA_pol_Rpb2_2 PF04561 1.3e-10 7
TRITD7Av1G169530 RNA_pol_Rpb2_2 PF04561 1.6e-10 8
TRITD7Av1G169530 RNA_pol_Rpb2_6 PF00562 2.6e-99 9
TRITD7Av1G169530 RNA_pol_Rpb2_6 PF00562 8.2e-73 10
TRITD7Av1G169530 RNA_pol_Rpb2_6 PF00562 2.3e-58 11
TRITD7Av1G169530 RNA_pol_Rpb2_4 PF04566 1.6e-20 12
TRITD7Av1G169530 RNA_pol_Rpb2_4 PF04566 1.9e-20 13
TRITD7Av1G169530 RNA_pol_Rpb2_5 PF04567 7.2e-06 14
TRITD7Av1G169530 RNA_pol_Rpb2_5 PF04567 9.1e-06 15

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- TRITD7Av1G169530.1 3213 1070aa TRITD7Av1G169530.1
- TRITD7Av1G169530.3 783 260aa TRITD7Av1G169530.3
- TRITD7Av1G169530.2 3678 1225aa TRITD7Av1G169530.2

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TRITD7Av1G169530

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TRITD7Av1G169530

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression