RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	TRITD6Bv1G066560	Gene ID		Accession	-
Symbol		Alias	-	Full Name	DNA-directed RNA polymerase subunit beta
Status	Confidence	Length	24639 bases	Strand	Plus strand
Position	6B : 192655089 - 192679727	RNA binding domain	RNA_pol_Rpb2_1 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6 , RNA_pol_Rpb2_4 , RNA_pol_Rpb2_5
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
TRITD6Bv1G066560	RNA_pol_Rpb2_1	PF04563	6.7e-47	1
TRITD6Bv1G066560	RNA_pol_Rpb2_1	PF04563	8.2e-47	2
TRITD6Bv1G066560	RNA_pol_Rpb2_1	PF04563	1.1e-46	3
TRITD6Bv1G066560	RNA_pol_Rpb2_1	PF04563	1.1e-46	4
TRITD6Bv1G066560	RNA_pol_Rpb2_1	PF04563	1.1e-46	5
TRITD6Bv1G066560	RNA_pol_Rpb2_1	PF04563	1.2e-46	6
TRITD6Bv1G066560	RNA_pol_Rpb2_1	PF04563	1.9e-46	7
TRITD6Bv1G066560	RNA_pol_Rpb2_1	PF04563	1.9e-46	8
TRITD6Bv1G066560	RNA_pol_Rpb2_1	PF04563	1.9e-46	9
TRITD6Bv1G066560	RNA_pol_Rpb2_1	PF04563	2.2e-46	10
TRITD6Bv1G066560	RNA_pol_Rpb2_1	PF04563	2.6e-46	11
TRITD6Bv1G066560	RNA_pol_Rpb2_1	PF04563	3.3e-46	12
TRITD6Bv1G066560	RNA_pol_Rpb2_1	PF04563	3.7e-46	13
TRITD6Bv1G066560	RNA_pol_Rpb2_1	PF04563	3.8e-46	14
TRITD6Bv1G066560	RNA_pol_Rpb2_1	PF04563	4.8e-37	15
TRITD6Bv1G066560	RNA_pol_Rpb2_3	PF04565	1.2e-19	16
TRITD6Bv1G066560	RNA_pol_Rpb2_3	PF04565	1.4e-19	17
TRITD6Bv1G066560	RNA_pol_Rpb2_3	PF04565	1.5e-19	18
TRITD6Bv1G066560	RNA_pol_Rpb2_3	PF04565	1.5e-19	19
TRITD6Bv1G066560	RNA_pol_Rpb2_3	PF04565	1.6e-19	20
TRITD6Bv1G066560	RNA_pol_Rpb2_3	PF04565	1.6e-19	21
TRITD6Bv1G066560	RNA_pol_Rpb2_3	PF04565	2.1e-19	22
TRITD6Bv1G066560	RNA_pol_Rpb2_3	PF04565	2.2e-19	23
TRITD6Bv1G066560	RNA_pol_Rpb2_3	PF04565	2.3e-19	24
TRITD6Bv1G066560	RNA_pol_Rpb2_3	PF04565	2.3e-19	25
TRITD6Bv1G066560	RNA_pol_Rpb2_3	PF04565	2.3e-19	26
TRITD6Bv1G066560	RNA_pol_Rpb2_3	PF04565	2.4e-19	27
TRITD6Bv1G066560	RNA_pol_Rpb2_3	PF04565	2.7e-19	28
TRITD6Bv1G066560	RNA_pol_Rpb2_3	PF04565	3.1e-19	29
TRITD6Bv1G066560	RNA_pol_Rpb2_3	PF04565	3.1e-19	30
TRITD6Bv1G066560	RNA_pol_Rpb2_3	PF04565	3.3e-19	31
TRITD6Bv1G066560	RNA_pol_Rpb2_3	PF04565	3.3e-19	32
TRITD6Bv1G066560	RNA_pol_Rpb2_7	PF04560	1.2e-31	33
TRITD6Bv1G066560	RNA_pol_Rpb2_7	PF04560	1.5e-31	34
TRITD6Bv1G066560	RNA_pol_Rpb2_7	PF04560	1.9e-31	35
TRITD6Bv1G066560	RNA_pol_Rpb2_7	PF04560	2.6e-31	36
TRITD6Bv1G066560	RNA_pol_Rpb2_7	PF04560	2.8e-31	37
TRITD6Bv1G066560	RNA_pol_Rpb2_7	PF04560	2.9e-31	38
TRITD6Bv1G066560	RNA_pol_Rpb2_2	PF04561	7.3e-22	39
TRITD6Bv1G066560	RNA_pol_Rpb2_2	PF04561	8.4e-22	40
TRITD6Bv1G066560	RNA_pol_Rpb2_2	PF04561	1e-21	41
TRITD6Bv1G066560	RNA_pol_Rpb2_2	PF04561	1e-21	42
TRITD6Bv1G066560	RNA_pol_Rpb2_2	PF04561	1.1e-21	43
TRITD6Bv1G066560	RNA_pol_Rpb2_2	PF04561	1.1e-21	44
TRITD6Bv1G066560	RNA_pol_Rpb2_2	PF04561	1.2e-21	45
TRITD6Bv1G066560	RNA_pol_Rpb2_2	PF04561	1.2e-21	46
TRITD6Bv1G066560	RNA_pol_Rpb2_2	PF04561	1.2e-21	47
TRITD6Bv1G066560	RNA_pol_Rpb2_2	PF04561	1.3e-21	48
TRITD6Bv1G066560	RNA_pol_Rpb2_2	PF04561	1.5e-21	49
TRITD6Bv1G066560	RNA_pol_Rpb2_2	PF04561	1.8e-21	50
TRITD6Bv1G066560	RNA_pol_Rpb2_2	PF04561	1.8e-21	51
TRITD6Bv1G066560	RNA_pol_Rpb2_2	PF04561	1.9e-21	52
TRITD6Bv1G066560	RNA_pol_Rpb2_2	PF04561	2e-21	53
TRITD6Bv1G066560	RNA_pol_Rpb2_2	PF04561	3.5e-17	54
TRITD6Bv1G066560	RNA_pol_Rpb2_6	PF00562	2.4e-120	55
TRITD6Bv1G066560	RNA_pol_Rpb2_6	PF00562	4.3e-120	56
TRITD6Bv1G066560	RNA_pol_Rpb2_6	PF00562	6.2e-120	57
TRITD6Bv1G066560	RNA_pol_Rpb2_6	PF00562	6.7e-120	58
TRITD6Bv1G066560	RNA_pol_Rpb2_6	PF00562	7.4e-120	59
TRITD6Bv1G066560	RNA_pol_Rpb2_6	PF00562	1.2e-110	60
TRITD6Bv1G066560	RNA_pol_Rpb2_6	PF00562	1.2e-110	61
TRITD6Bv1G066560	RNA_pol_Rpb2_6	PF00562	1.4e-92	62
TRITD6Bv1G066560	RNA_pol_Rpb2_6	PF00562	2.6e-86	63
TRITD6Bv1G066560	RNA_pol_Rpb2_6	PF00562	1.6e-73	64
TRITD6Bv1G066560	RNA_pol_Rpb2_6	PF00562	3e-41	65
TRITD6Bv1G066560	RNA_pol_Rpb2_6	PF00562	4.1e-33	66
TRITD6Bv1G066560	RNA_pol_Rpb2_6	PF00562	7.1e-33	67
TRITD6Bv1G066560	RNA_pol_Rpb2_6	PF00562	7.9e-33	68
TRITD6Bv1G066560	RNA_pol_Rpb2_4	PF04566	4.4e-22	69
TRITD6Bv1G066560	RNA_pol_Rpb2_4	PF04566	5e-22	70
TRITD6Bv1G066560	RNA_pol_Rpb2_4	PF04566	5.3e-22	71
TRITD6Bv1G066560	RNA_pol_Rpb2_4	PF04566	5.9e-22	72
TRITD6Bv1G066560	RNA_pol_Rpb2_4	PF04566	6.1e-22	73
TRITD6Bv1G066560	RNA_pol_Rpb2_4	PF04566	6.2e-22	74
TRITD6Bv1G066560	RNA_pol_Rpb2_4	PF04566	6.8e-22	75
TRITD6Bv1G066560	RNA_pol_Rpb2_4	PF04566	6.8e-22	76
TRITD6Bv1G066560	RNA_pol_Rpb2_4	PF04566	6.9e-22	77
TRITD6Bv1G066560	RNA_pol_Rpb2_4	PF04566	6.9e-22	78
TRITD6Bv1G066560	RNA_pol_Rpb2_4	PF04566	7.1e-22	79
TRITD6Bv1G066560	RNA_pol_Rpb2_4	PF04566	7.3e-22	80
TRITD6Bv1G066560	RNA_pol_Rpb2_4	PF04566	9.6e-22	81
TRITD6Bv1G066560	RNA_pol_Rpb2_4	PF04566	9.6e-22	82
TRITD6Bv1G066560	RNA_pol_Rpb2_4	PF04566	9.8e-22	83
TRITD6Bv1G066560	RNA_pol_Rpb2_4	PF04566	1e-21	84
TRITD6Bv1G066560	RNA_pol_Rpb2_4	PF04566	1.4e-21	85
TRITD6Bv1G066560	RNA_pol_Rpb2_5	PF04567	4.5e-10	86
TRITD6Bv1G066560	RNA_pol_Rpb2_5	PF04567	6.2e-10	87
TRITD6Bv1G066560	RNA_pol_Rpb2_5	PF04567	6.3e-10	88
TRITD6Bv1G066560	RNA_pol_Rpb2_5	PF04567	6.4e-10	89
TRITD6Bv1G066560	RNA_pol_Rpb2_5	PF04567	6.5e-10	90
TRITD6Bv1G066560	RNA_pol_Rpb2_5	PF04567	7.4e-10	91
TRITD6Bv1G066560	RNA_pol_Rpb2_5	PF04567	7.4e-10	92
TRITD6Bv1G066560	RNA_pol_Rpb2_5	PF04567	1.1e-09	93
TRITD6Bv1G066560	RNA_pol_Rpb2_5	PF04567	1.2e-09	94
TRITD6Bv1G066560	RNA_pol_Rpb2_5	PF04567	1.2e-09	95
TRITD6Bv1G066560	RNA_pol_Rpb2_5	PF04567	1.2e-09	96
TRITD6Bv1G066560	RNA_pol_Rpb2_5	PF04567	1.2e-09	97
TRITD6Bv1G066560	RNA_pol_Rpb2_5	PF04567	3.2e-08	98
TRITD6Bv1G066560	RNA_pol_Rpb2_5	PF04567	1.4e-07	99

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	TRITD6Bv1G066560.14	3402	1133aa	TRITD6Bv1G066560.14
-	TRITD6Bv1G066560.7	2472	823aa	TRITD6Bv1G066560.7
-	TRITD6Bv1G066560.3	1896	631aa	TRITD6Bv1G066560.3
-	TRITD6Bv1G066560.19	1671	556aa	TRITD6Bv1G066560.19
-	TRITD6Bv1G066560.9	2505	834aa	TRITD6Bv1G066560.9
-	TRITD6Bv1G066560.6	1971	656aa	TRITD6Bv1G066560.6
-	TRITD6Bv1G066560.15	3327	1108aa	TRITD6Bv1G066560.15
-	TRITD6Bv1G066560.18	1974	657aa	TRITD6Bv1G066560.18
-	TRITD6Bv1G066560.16	2316	771aa	TRITD6Bv1G066560.16
-	TRITD6Bv1G066560.11	2871	956aa	TRITD6Bv1G066560.11
-	TRITD6Bv1G066560.12	3207	1068aa	TRITD6Bv1G066560.12
-	TRITD6Bv1G066560.1	1584	527aa	TRITD6Bv1G066560.1
-	TRITD6Bv1G066560.2	1695	564aa	TRITD6Bv1G066560.2
-	TRITD6Bv1G066560.4	1965	654aa	TRITD6Bv1G066560.4
-	TRITD6Bv1G066560.10	2643	880aa	TRITD6Bv1G066560.10
-	TRITD6Bv1G066560.5	1917	638aa	TRITD6Bv1G066560.5
-	TRITD6Bv1G066560.13	3474	1157aa	TRITD6Bv1G066560.13
-	TRITD6Bv1G066560.17	2508	835aa	TRITD6Bv1G066560.17
-	TRITD6Bv1G066560.8	2478	825aa	TRITD6Bv1G066560.8

Gene Model

Click here to download TRITD6Bv1G066560's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download TRITD6Bv1G066560's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
TRITD6Bv1G066560

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
TRITD6Bv1G066560

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression