Description

Ensembl ID TRITD6Av1G055370 Gene ID Accession -
Symbol Alias - Full Name DNA-directed RNA polymerase subunit beta
Status Confidence Length 21314 bases Strand Plus strand
Position 6A : 132337466 - 132358779 RNA binding domain RNA_pol_Rpb2_1 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6 , RNA_pol_Rpb2_4 , RNA_pol_Rpb2_5
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
TRITD6Av1G055370 RNA_pol_Rpb2_1 PF04563 2.8e-46 1
TRITD6Av1G055370 RNA_pol_Rpb2_1 PF04563 3.4e-46 2
TRITD6Av1G055370 RNA_pol_Rpb2_1 PF04563 4.7e-46 3
TRITD6Av1G055370 RNA_pol_Rpb2_1 PF04563 5.1e-46 4
TRITD6Av1G055370 RNA_pol_Rpb2_1 PF04563 7.8e-46 5
TRITD6Av1G055370 RNA_pol_Rpb2_1 PF04563 1.1e-45 6
TRITD6Av1G055370 RNA_pol_Rpb2_1 PF04563 1.2e-45 7
TRITD6Av1G055370 RNA_pol_Rpb2_1 PF04563 1.5e-45 8
TRITD6Av1G055370 RNA_pol_Rpb2_1 PF04563 1.6e-45 9
TRITD6Av1G055370 RNA_pol_Rpb2_1 PF04563 2.6e-21 10
TRITD6Av1G055370 RNA_pol_Rpb2_3 PF04565 1.2e-19 11
TRITD6Av1G055370 RNA_pol_Rpb2_3 PF04565 1.4e-19 12
TRITD6Av1G055370 RNA_pol_Rpb2_3 PF04565 1.5e-19 13
TRITD6Av1G055370 RNA_pol_Rpb2_3 PF04565 1.6e-19 14
TRITD6Av1G055370 RNA_pol_Rpb2_3 PF04565 2.3e-19 15
TRITD6Av1G055370 RNA_pol_Rpb2_3 PF04565 2.6e-19 16
TRITD6Av1G055370 RNA_pol_Rpb2_3 PF04565 2.6e-19 17
TRITD6Av1G055370 RNA_pol_Rpb2_3 PF04565 2.7e-19 18
TRITD6Av1G055370 RNA_pol_Rpb2_3 PF04565 2.9e-19 19
TRITD6Av1G055370 RNA_pol_Rpb2_3 PF04565 3.2e-19 20
TRITD6Av1G055370 RNA_pol_Rpb2_3 PF04565 3.3e-19 21
TRITD6Av1G055370 RNA_pol_Rpb2_7 PF04560 1.4e-31 22
TRITD6Av1G055370 RNA_pol_Rpb2_7 PF04560 2.2e-31 23
TRITD6Av1G055370 RNA_pol_Rpb2_7 PF04560 2.7e-31 24
TRITD6Av1G055370 RNA_pol_Rpb2_7 PF04560 2.7e-31 25
TRITD6Av1G055370 RNA_pol_Rpb2_7 PF04560 2.9e-31 26
TRITD6Av1G055370 RNA_pol_Rpb2_7 PF04560 1.2e-25 27
TRITD6Av1G055370 RNA_pol_Rpb2_2 PF04561 1.2e-22 28
TRITD6Av1G055370 RNA_pol_Rpb2_2 PF04561 1.4e-22 29
TRITD6Av1G055370 RNA_pol_Rpb2_2 PF04561 1.7e-22 30
TRITD6Av1G055370 RNA_pol_Rpb2_2 PF04561 1.8e-22 31
TRITD6Av1G055370 RNA_pol_Rpb2_2 PF04561 1.9e-22 32
TRITD6Av1G055370 RNA_pol_Rpb2_2 PF04561 2.5e-22 33
TRITD6Av1G055370 RNA_pol_Rpb2_2 PF04561 2.7e-22 34
TRITD6Av1G055370 RNA_pol_Rpb2_2 PF04561 3.2e-22 35
TRITD6Av1G055370 RNA_pol_Rpb2_2 PF04561 3.3e-22 36
TRITD6Av1G055370 RNA_pol_Rpb2_2 PF04561 3.2e-19 37
TRITD6Av1G055370 RNA_pol_Rpb2_2 PF04561 5.8e-12 38
TRITD6Av1G055370 RNA_pol_Rpb2_6 PF00562 1.1e-114 39
TRITD6Av1G055370 RNA_pol_Rpb2_6 PF00562 7e-114 40
TRITD6Av1G055370 RNA_pol_Rpb2_6 PF00562 1.3e-113 41
TRITD6Av1G055370 RNA_pol_Rpb2_6 PF00562 5.8e-109 42
TRITD6Av1G055370 RNA_pol_Rpb2_6 PF00562 2.1e-80 43
TRITD6Av1G055370 RNA_pol_Rpb2_6 PF00562 3.5e-80 44
TRITD6Av1G055370 RNA_pol_Rpb2_6 PF00562 3.5e-79 45
TRITD6Av1G055370 RNA_pol_Rpb2_6 PF00562 1.5e-67 46
TRITD6Av1G055370 RNA_pol_Rpb2_6 PF00562 7.6e-27 47
TRITD6Av1G055370 RNA_pol_Rpb2_4 PF04566 5.2e-22 48
TRITD6Av1G055370 RNA_pol_Rpb2_4 PF04566 5.6e-22 49
TRITD6Av1G055370 RNA_pol_Rpb2_4 PF04566 6.7e-22 50
TRITD6Av1G055370 RNA_pol_Rpb2_4 PF04566 7e-22 51
TRITD6Av1G055370 RNA_pol_Rpb2_4 PF04566 7e-22 52
TRITD6Av1G055370 RNA_pol_Rpb2_4 PF04566 7e-22 53
TRITD6Av1G055370 RNA_pol_Rpb2_4 PF04566 7.2e-22 54
TRITD6Av1G055370 RNA_pol_Rpb2_4 PF04566 7.4e-22 55
TRITD6Av1G055370 RNA_pol_Rpb2_4 PF04566 9.9e-22 56
TRITD6Av1G055370 RNA_pol_Rpb2_4 PF04566 1.7e-21 57
TRITD6Av1G055370 RNA_pol_Rpb2_5 PF04567 3.9e-10 58
TRITD6Av1G055370 RNA_pol_Rpb2_5 PF04567 7.1e-10 59
TRITD6Av1G055370 RNA_pol_Rpb2_5 PF04567 1.2e-09 60
TRITD6Av1G055370 RNA_pol_Rpb2_5 PF04567 1.2e-09 61
TRITD6Av1G055370 RNA_pol_Rpb2_5 PF04567 1.3e-09 62
TRITD6Av1G055370 RNA_pol_Rpb2_5 PF04567 2.2e-09 63
TRITD6Av1G055370 RNA_pol_Rpb2_5 PF04567 2.2e-09 64
TRITD6Av1G055370 RNA_pol_Rpb2_5 PF04567 5.4e-08 65

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- TRITD6Av1G055370.11 2781 926aa TRITD6Av1G055370.11
- TRITD6Av1G055370.9 3396 1131aa TRITD6Av1G055370.9
- TRITD6Av1G055370.12 1830 609aa TRITD6Av1G055370.12
- TRITD6Av1G055370.8 3474 1157aa TRITD6Av1G055370.8
- TRITD6Av1G055370.5 2472 823aa TRITD6Av1G055370.5
- TRITD6Av1G055370.4 1917 638aa TRITD6Av1G055370.4
- TRITD6Av1G055370.10 3273 1090aa TRITD6Av1G055370.10
- TRITD6Av1G055370.2 1695 564aa TRITD6Av1G055370.2
- TRITD6Av1G055370.13 1029 342aa TRITD6Av1G055370.13
- TRITD6Av1G055370.1 1581 526aa TRITD6Av1G055370.1
- TRITD6Av1G055370.3 1965 654aa TRITD6Av1G055370.3
- TRITD6Av1G055370.6 2871 956aa TRITD6Av1G055370.6
- TRITD6Av1G055370.7 3012 1003aa TRITD6Av1G055370.7

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TRITD6Av1G055370

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TRITD6Av1G055370

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression