Description

Ensembl ID TRITD5Av1G243060 Gene ID Accession -
Symbol Alias - Full Name DNA-directed RNA polymerase subunit beta
Status Confidence Length 14411 bases Strand Plus strand
Position 5A : 631137922 - 631152332 RNA binding domain RNA_pol_Rpb2_1 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6 , RNA_pol_Rpb2_4 , RNA_pol_Rpb2_5
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
TRITD5Av1G243060 RNA_pol_Rpb2_1 PF04563 5.8e-34 1
TRITD5Av1G243060 RNA_pol_Rpb2_1 PF04563 7.1e-31 2
TRITD5Av1G243060 RNA_pol_Rpb2_3 PF04565 2.8e-18 3
TRITD5Av1G243060 RNA_pol_Rpb2_7 PF04560 3.4e-30 4
TRITD5Av1G243060 RNA_pol_Rpb2_7 PF04560 3.8e-30 5
TRITD5Av1G243060 RNA_pol_Rpb2_7 PF04560 5.5e-30 6
TRITD5Av1G243060 RNA_pol_Rpb2_7 PF04560 5.8e-30 7
TRITD5Av1G243060 RNA_pol_Rpb2_7 PF04560 1e-29 8
TRITD5Av1G243060 RNA_pol_Rpb2_2 PF04561 5.1e-11 9
TRITD5Av1G243060 RNA_pol_Rpb2_6 PF00562 8.4e-113 10
TRITD5Av1G243060 RNA_pol_Rpb2_6 PF00562 9.3e-113 11
TRITD5Av1G243060 RNA_pol_Rpb2_6 PF00562 3e-112 12
TRITD5Av1G243060 RNA_pol_Rpb2_6 PF00562 1e-99 13
TRITD5Av1G243060 RNA_pol_Rpb2_6 PF00562 1.8e-95 14
TRITD5Av1G243060 RNA_pol_Rpb2_4 PF04566 4e-18 15
TRITD5Av1G243060 RNA_pol_Rpb2_4 PF04566 4.2e-18 16
TRITD5Av1G243060 RNA_pol_Rpb2_4 PF04566 6.9e-18 17
TRITD5Av1G243060 RNA_pol_Rpb2_5 PF04567 1.4e-09 18
TRITD5Av1G243060 RNA_pol_Rpb2_5 PF04567 1.4e-09 19
TRITD5Av1G243060 RNA_pol_Rpb2_5 PF04567 3.1e-09 20

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- TRITD5Av1G243060.2 3498 1165aa TRITD5Av1G243060.2
- TRITD5Av1G243060.4 1911 636aa TRITD5Av1G243060.4
- TRITD5Av1G243060.1 567 188aa TRITD5Av1G243060.1
- TRITD5Av1G243060.6 1332 443aa TRITD5Av1G243060.6
- TRITD5Av1G243060.3 1992 663aa TRITD5Av1G243060.3
- TRITD5Av1G243060.5 1425 474aa TRITD5Av1G243060.5

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TRITD5Av1G243060

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TRITD5Av1G243060

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression