Description

Ensembl ID TRITD5Av1G198880 Gene ID Accession -
Symbol Alias - Full Name DNA-directed RNA polymerase subunit beta
Status Confidence Length 7698 bases Strand Plus strand
Position 5A : 534617864 - 534625561 RNA binding domain RNA_pol_Rpb2_1 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6 , RNA_pol_Rpb2_4 , RNA_pol_Rpb2_5
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
TRITD5Av1G198880 RNA_pol_Rpb2_1 PF04563 2.4e-73 1
TRITD5Av1G198880 RNA_pol_Rpb2_1 PF04563 2.7e-73 2
TRITD5Av1G198880 RNA_pol_Rpb2_1 PF04563 8.2e-73 3
TRITD5Av1G198880 RNA_pol_Rpb2_1 PF04563 2.3e-63 4
TRITD5Av1G198880 RNA_pol_Rpb2_1 PF04563 6.4e-63 5
TRITD5Av1G198880 RNA_pol_Rpb2_1 PF04563 8.4e-61 6
TRITD5Av1G198880 RNA_pol_Rpb2_1 PF04563 2.8e-35 7
TRITD5Av1G198880 RNA_pol_Rpb2_1 PF04563 3.6e-09 8
TRITD5Av1G198880 RNA_pol_Rpb2_1 PF04563 5.5e-09 9
TRITD5Av1G198880 RNA_pol_Rpb2_1 PF04563 5.8e-09 10
TRITD5Av1G198880 RNA_pol_Rpb2_3 PF04565 1.3e-25 11
TRITD5Av1G198880 RNA_pol_Rpb2_3 PF04565 1.4e-25 12
TRITD5Av1G198880 RNA_pol_Rpb2_3 PF04565 1.6e-25 13
TRITD5Av1G198880 RNA_pol_Rpb2_3 PF04565 1.6e-25 14
TRITD5Av1G198880 RNA_pol_Rpb2_3 PF04565 1.6e-25 15
TRITD5Av1G198880 RNA_pol_Rpb2_3 PF04565 1.7e-25 16
TRITD5Av1G198880 RNA_pol_Rpb2_3 PF04565 1.8e-25 17
TRITD5Av1G198880 RNA_pol_Rpb2_3 PF04565 2e-25 18
TRITD5Av1G198880 RNA_pol_Rpb2_3 PF04565 2.2e-25 19
TRITD5Av1G198880 RNA_pol_Rpb2_3 PF04565 2.8e-25 20
TRITD5Av1G198880 RNA_pol_Rpb2_3 PF04565 9.2e-17 21
TRITD5Av1G198880 RNA_pol_Rpb2_7 PF04560 8e-36 22
TRITD5Av1G198880 RNA_pol_Rpb2_7 PF04560 8.2e-36 23
TRITD5Av1G198880 RNA_pol_Rpb2_7 PF04560 2.1e-35 24
TRITD5Av1G198880 RNA_pol_Rpb2_7 PF04560 2.4e-35 25
TRITD5Av1G198880 RNA_pol_Rpb2_7 PF04560 2.4e-35 26
TRITD5Av1G198880 RNA_pol_Rpb2_7 PF04560 2.7e-35 27
TRITD5Av1G198880 RNA_pol_Rpb2_7 PF04560 2.8e-35 28
TRITD5Av1G198880 RNA_pol_Rpb2_7 PF04560 2.8e-35 29
TRITD5Av1G198880 RNA_pol_Rpb2_7 PF04560 1.4e-24 30
TRITD5Av1G198880 RNA_pol_Rpb2_2 PF04561 5.7e-57 31
TRITD5Av1G198880 RNA_pol_Rpb2_2 PF04561 5.8e-57 32
TRITD5Av1G198880 RNA_pol_Rpb2_2 PF04561 6.7e-57 33
TRITD5Av1G198880 RNA_pol_Rpb2_2 PF04561 1.2e-56 34
TRITD5Av1G198880 RNA_pol_Rpb2_2 PF04561 1.7e-56 35
TRITD5Av1G198880 RNA_pol_Rpb2_2 PF04561 1.8e-56 36
TRITD5Av1G198880 RNA_pol_Rpb2_2 PF04561 1.8e-56 37
TRITD5Av1G198880 RNA_pol_Rpb2_2 PF04561 1.3e-51 38
TRITD5Av1G198880 RNA_pol_Rpb2_2 PF04561 8.5e-15 39
TRITD5Av1G198880 RNA_pol_Rpb2_2 PF04561 8.7e-15 40
TRITD5Av1G198880 RNA_pol_Rpb2_6 PF00562 6e-126 41
TRITD5Av1G198880 RNA_pol_Rpb2_6 PF00562 8.2e-126 42
TRITD5Av1G198880 RNA_pol_Rpb2_6 PF00562 8.9e-126 43
TRITD5Av1G198880 RNA_pol_Rpb2_6 PF00562 1.8e-125 44
TRITD5Av1G198880 RNA_pol_Rpb2_6 PF00562 2.1e-125 45
TRITD5Av1G198880 RNA_pol_Rpb2_6 PF00562 2.2e-125 46
TRITD5Av1G198880 RNA_pol_Rpb2_6 PF00562 2.8e-125 47
TRITD5Av1G198880 RNA_pol_Rpb2_6 PF00562 1.7e-80 48
TRITD5Av1G198880 RNA_pol_Rpb2_6 PF00562 2.3e-80 49
TRITD5Av1G198880 RNA_pol_Rpb2_6 PF00562 5.2e-37 50
TRITD5Av1G198880 RNA_pol_Rpb2_4 PF04566 7.3e-21 51
TRITD5Av1G198880 RNA_pol_Rpb2_4 PF04566 8.1e-21 52
TRITD5Av1G198880 RNA_pol_Rpb2_4 PF04566 9.1e-21 53
TRITD5Av1G198880 RNA_pol_Rpb2_4 PF04566 9.3e-21 54
TRITD5Av1G198880 RNA_pol_Rpb2_4 PF04566 9.7e-21 55
TRITD5Av1G198880 RNA_pol_Rpb2_4 PF04566 1e-20 56
TRITD5Av1G198880 RNA_pol_Rpb2_4 PF04566 1e-20 57
TRITD5Av1G198880 RNA_pol_Rpb2_4 PF04566 1.1e-20 58
TRITD5Av1G198880 RNA_pol_Rpb2_4 PF04566 1.6e-20 59
TRITD5Av1G198880 RNA_pol_Rpb2_4 PF04566 1.7e-20 60
TRITD5Av1G198880 RNA_pol_Rpb2_4 PF04566 6.7e-07 61
TRITD5Av1G198880 RNA_pol_Rpb2_5 PF04567 9.2e-17 62
TRITD5Av1G198880 RNA_pol_Rpb2_5 PF04567 1e-16 63
TRITD5Av1G198880 RNA_pol_Rpb2_5 PF04567 1.1e-16 64
TRITD5Av1G198880 RNA_pol_Rpb2_5 PF04567 1.2e-16 65
TRITD5Av1G198880 RNA_pol_Rpb2_5 PF04567 1.3e-16 66
TRITD5Av1G198880 RNA_pol_Rpb2_5 PF04567 1.4e-16 67
TRITD5Av1G198880 RNA_pol_Rpb2_5 PF04567 1.4e-16 68
TRITD5Av1G198880 RNA_pol_Rpb2_5 PF04567 1.5e-16 69
TRITD5Av1G198880 RNA_pol_Rpb2_5 PF04567 7.9e-12 70

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- TRITD5Av1G198880.1 2094 697aa TRITD5Av1G198880.1
- TRITD5Av1G198880.8 2814 937aa TRITD5Av1G198880.8
- TRITD5Av1G198880.12 999 332aa TRITD5Av1G198880.12
- TRITD5Av1G198880.5 1635 544aa TRITD5Av1G198880.5
- TRITD5Av1G198880.11 2301 766aa TRITD5Av1G198880.11
- TRITD5Av1G198880.9 2430 809aa TRITD5Av1G198880.9
- TRITD5Av1G198880.4 3546 1181aa TRITD5Av1G198880.4
- TRITD5Av1G198880.2 2217 738aa TRITD5Av1G198880.2
- TRITD5Av1G198880.7 3153 1050aa TRITD5Av1G198880.7
- TRITD5Av1G198880.3 3666 1221aa TRITD5Av1G198880.3
- TRITD5Av1G198880.10 2505 834aa TRITD5Av1G198880.10
- TRITD5Av1G198880.13 987 328aa TRITD5Av1G198880.13
- TRITD5Av1G198880.6 2487 828aa TRITD5Av1G198880.6

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TRITD5Av1G198880

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TRITD5Av1G198880

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression