Description

Ensembl ID TRITD2Av1G278480 Gene ID Accession -
Symbol Alias - Full Name DNA-directed RNA polymerase subunit beta
Status Confidence Length 9168 bases Strand Minus strand
Position 2A : 741696350 - 741705517 RNA binding domain RNA_pol_Rpb2_1 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6 , RNA_pol_Rpb2_4 , RNA_pol_Rpb2_5
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
TRITD2Av1G278480 RNA_pol_Rpb2_1 PF04563 1.7e-32 1
TRITD2Av1G278480 RNA_pol_Rpb2_1 PF04563 1.7e-32 2
TRITD2Av1G278480 RNA_pol_Rpb2_1 PF04563 1.9e-32 3
TRITD2Av1G278480 RNA_pol_Rpb2_1 PF04563 2.1e-32 4
TRITD2Av1G278480 RNA_pol_Rpb2_1 PF04563 2.6e-32 5
TRITD2Av1G278480 RNA_pol_Rpb2_1 PF04563 2.6e-32 6
TRITD2Av1G278480 RNA_pol_Rpb2_1 PF04563 2.6e-32 7
TRITD2Av1G278480 RNA_pol_Rpb2_1 PF04563 2.8e-32 8
TRITD2Av1G278480 RNA_pol_Rpb2_1 PF04563 8.7e-10 9
TRITD2Av1G278480 RNA_pol_Rpb2_1 PF04563 1.1e-09 10
TRITD2Av1G278480 RNA_pol_Rpb2_3 PF04565 3.2e-14 11
TRITD2Av1G278480 RNA_pol_Rpb2_3 PF04565 3.3e-14 12
TRITD2Av1G278480 RNA_pol_Rpb2_3 PF04565 7.4e-14 13
TRITD2Av1G278480 RNA_pol_Rpb2_3 PF04565 7.5e-14 14
TRITD2Av1G278480 RNA_pol_Rpb2_3 PF04565 7.6e-14 15
TRITD2Av1G278480 RNA_pol_Rpb2_3 PF04565 8.1e-14 16
TRITD2Av1G278480 RNA_pol_Rpb2_3 PF04565 9.1e-14 17
TRITD2Av1G278480 RNA_pol_Rpb2_3 PF04565 1.7e-09 18
TRITD2Av1G278480 RNA_pol_Rpb2_7 PF04560 1.1e-27 19
TRITD2Av1G278480 RNA_pol_Rpb2_7 PF04560 4.3e-27 20
TRITD2Av1G278480 RNA_pol_Rpb2_7 PF04560 4.4e-27 21
TRITD2Av1G278480 RNA_pol_Rpb2_7 PF04560 4.6e-27 22
TRITD2Av1G278480 RNA_pol_Rpb2_2 PF04561 4.7e-07 23
TRITD2Av1G278480 RNA_pol_Rpb2_2 PF04561 4.7e-07 24
TRITD2Av1G278480 RNA_pol_Rpb2_2 PF04561 5.3e-07 25
TRITD2Av1G278480 RNA_pol_Rpb2_2 PF04561 5.8e-07 26
TRITD2Av1G278480 RNA_pol_Rpb2_2 PF04561 7.1e-07 27
TRITD2Av1G278480 RNA_pol_Rpb2_2 PF04561 7.1e-07 28
TRITD2Av1G278480 RNA_pol_Rpb2_2 PF04561 7.2e-07 29
TRITD2Av1G278480 RNA_pol_Rpb2_2 PF04561 7.5e-07 30
TRITD2Av1G278480 RNA_pol_Rpb2_6 PF00562 2.5e-98 31
TRITD2Av1G278480 RNA_pol_Rpb2_6 PF00562 2.5e-98 32
TRITD2Av1G278480 RNA_pol_Rpb2_6 PF00562 2.6e-98 33
TRITD2Av1G278480 RNA_pol_Rpb2_6 PF00562 2.7e-98 34
TRITD2Av1G278480 RNA_pol_Rpb2_6 PF00562 3.2e-73 35
TRITD2Av1G278480 RNA_pol_Rpb2_6 PF00562 2.4e-72 36
TRITD2Av1G278480 RNA_pol_Rpb2_6 PF00562 1.1e-57 37
TRITD2Av1G278480 RNA_pol_Rpb2_6 PF00562 7.1e-33 38
TRITD2Av1G278480 RNA_pol_Rpb2_6 PF00562 7.3e-33 39
TRITD2Av1G278480 RNA_pol_Rpb2_4 PF04566 1.9e-17 40
TRITD2Av1G278480 RNA_pol_Rpb2_4 PF04566 1.9e-17 41
TRITD2Av1G278480 RNA_pol_Rpb2_4 PF04566 2.1e-17 42
TRITD2Av1G278480 RNA_pol_Rpb2_4 PF04566 2.3e-17 43
TRITD2Av1G278480 RNA_pol_Rpb2_4 PF04566 2.7e-17 44
TRITD2Av1G278480 RNA_pol_Rpb2_4 PF04566 2.8e-17 45
TRITD2Av1G278480 RNA_pol_Rpb2_4 PF04566 2.9e-17 46
TRITD2Av1G278480 RNA_pol_Rpb2_4 PF04566 3.4e-17 47
TRITD2Av1G278480 RNA_pol_Rpb2_5 PF04567 3.7e-06 48
TRITD2Av1G278480 RNA_pol_Rpb2_5 PF04567 3.7e-06 49
TRITD2Av1G278480 RNA_pol_Rpb2_5 PF04567 4.2e-06 50
TRITD2Av1G278480 RNA_pol_Rpb2_5 PF04567 4.4e-06 51
TRITD2Av1G278480 RNA_pol_Rpb2_5 PF04567 5.2e-06 52
TRITD2Av1G278480 RNA_pol_Rpb2_5 PF04567 5.2e-06 53
TRITD2Av1G278480 RNA_pol_Rpb2_5 PF04567 5.3e-06 54
TRITD2Av1G278480 RNA_pol_Rpb2_5 PF04567 5.3e-06 55

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- TRITD2Av1G278480.9 2949 982aa TRITD2Av1G278480.9
- TRITD2Av1G278480.3 3708 1235aa TRITD2Av1G278480.3
- TRITD2Av1G278480.1 3615 1204aa TRITD2Av1G278480.1
- TRITD2Av1G278480.4 3642 1213aa TRITD2Av1G278480.4
- TRITD2Av1G278480.8 2958 985aa TRITD2Av1G278480.8
- TRITD2Av1G278480.5 3597 1198aa TRITD2Av1G278480.5
- TRITD2Av1G278480.7 3144 1047aa TRITD2Av1G278480.7
- TRITD2Av1G278480.11 609 202aa TRITD2Av1G278480.11
- TRITD2Av1G278480.6 3276 1091aa TRITD2Av1G278480.6
- TRITD2Av1G278480.10 627 208aa TRITD2Av1G278480.10
- TRITD2Av1G278480.2 786 261aa TRITD2Av1G278480.2

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TRITD2Av1G278480

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TRITD2Av1G278480

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression