Description

Ensembl ID TRIDC2AG052840 Gene ID Accession -
Symbol Alias - Full Name Rnase III family protein, Shoot apical meristem (SAM) formation and maintenanc
Status Confidence Length 29121 bases Strand Minus strand
Position 2A : 602818435 - 602847555 RNA binding domain ResIII , DEAD , DND1_DSRM , dsrm , Ribonucleas_3_3 , PAZ , Dicer_dimer , Ribonuclease_3
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
TRIDC2AG052840 ResIII PF04851 3.5e-14 1
TRIDC2AG052840 ResIII PF04851 6.4e-14 2
TRIDC2AG052840 ResIII PF04851 1.1e-11 3
TRIDC2AG052840 ResIII PF04851 1.6e-07 4
TRIDC2AG052840 DEAD PF00270 8.2e-14 5
TRIDC2AG052840 DEAD PF00270 1.3e-13 6
TRIDC2AG052840 DEAD PF00270 3.6e-13 7
TRIDC2AG052840 DEAD PF00270 8.9e-08 8
TRIDC2AG052840 DND1_DSRM PF14709 1.7e-17 9
TRIDC2AG052840 DND1_DSRM PF14709 3.9e-16 10
TRIDC2AG052840 DND1_DSRM PF14709 4.5e-16 11
TRIDC2AG052840 DND1_DSRM PF14709 3.2e-15 12
TRIDC2AG052840 dsrm PF00035 3.5e-06 13
TRIDC2AG052840 dsrm PF00035 1.2e-05 14
TRIDC2AG052840 dsrm PF00035 1.4e-05 15
TRIDC2AG052840 dsrm PF00035 1.5e-05 16
TRIDC2AG052840 Ribonucleas_3_3 PF14622 4e-28 17
TRIDC2AG052840 Ribonucleas_3_3 PF14622 4.9e-28 18
TRIDC2AG052840 Ribonucleas_3_3 PF14622 1e-26 19
TRIDC2AG052840 PAZ PF02170 7.7e-08 20
TRIDC2AG052840 Dicer_dimer PF03368 5.5e-26 21
TRIDC2AG052840 Dicer_dimer PF03368 3.1e-22 22
TRIDC2AG052840 Dicer_dimer PF03368 3.1e-22 23
TRIDC2AG052840 Dicer_dimer PF03368 3.3e-22 24
TRIDC2AG052840 Dicer_dimer PF03368 3.8e-22 25
TRIDC2AG052840 Dicer_dimer PF03368 4.5e-22 26
TRIDC2AG052840 Dicer_dimer PF03368 4.6e-22 27
TRIDC2AG052840 Dicer_dimer PF03368 5.4e-22 28
TRIDC2AG052840 Dicer_dimer PF03368 5.4e-22 29
TRIDC2AG052840 Dicer_dimer PF03368 5.4e-22 30
TRIDC2AG052840 Dicer_dimer PF03368 5.4e-22 31
TRIDC2AG052840 Dicer_dimer PF03368 6.6e-22 32
TRIDC2AG052840 Dicer_dimer PF03368 7.5e-22 33
TRIDC2AG052840 Dicer_dimer PF03368 7.8e-22 34
TRIDC2AG052840 Dicer_dimer PF03368 7.9e-22 35
TRIDC2AG052840 Dicer_dimer PF03368 8.2e-22 36
TRIDC2AG052840 Dicer_dimer PF03368 8.6e-22 37
TRIDC2AG052840 Dicer_dimer PF03368 9.8e-22 38
TRIDC2AG052840 Dicer_dimer PF03368 1.2e-21 39
TRIDC2AG052840 Ribonuclease_3 PF00636 5.7e-45 40
TRIDC2AG052840 Ribonuclease_3 PF00636 5.7e-45 41
TRIDC2AG052840 Ribonuclease_3 PF00636 6.6e-45 42
TRIDC2AG052840 Ribonuclease_3 PF00636 6.6e-45 43
TRIDC2AG052840 Ribonuclease_3 PF00636 4.7e-44 44
TRIDC2AG052840 Ribonuclease_3 PF00636 4.7e-44 45

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- TRIDC2AG052840.23 1630 526aa TRIDC2AG052840.23
- TRIDC2AG052840.9 1625 382aa TRIDC2AG052840.9
- TRIDC2AG052840.16 2339 368aa TRIDC2AG052840.16
- TRIDC2AG052840.25 680 226aa TRIDC2AG052840.25
- TRIDC2AG052840.11 2524 471aa TRIDC2AG052840.11
- TRIDC2AG052840.19 2480 728aa TRIDC2AG052840.19
- TRIDC2AG052840.8 2757 918aa TRIDC2AG052840.8
- TRIDC2AG052840.24 595 106aa TRIDC2AG052840.24
- TRIDC2AG052840.13 2274 533aa TRIDC2AG052840.13
- TRIDC2AG052840.22 2157 485aa TRIDC2AG052840.22
- TRIDC2AG052840.10 2207 664aa TRIDC2AG052840.10
- TRIDC2AG052840.18 2279 367aa TRIDC2AG052840.18
- TRIDC2AG052840.20 2561 531aa TRIDC2AG052840.20
- TRIDC2AG052840.21 2496 618aa TRIDC2AG052840.21
- TRIDC2AG052840.12 1886 369aa TRIDC2AG052840.12
- TRIDC2AG052840.7 2612 803aa TRIDC2AG052840.7
- TRIDC2AG052840.4 4787 1544aa TRIDC2AG052840.4
- TRIDC2AG052840.1 2315 730aa TRIDC2AG052840.1
- TRIDC2AG052840.5 2247 683aa TRIDC2AG052840.5
- TRIDC2AG052840.6 2271 683aa TRIDC2AG052840.6
- TRIDC2AG052840.15 2540 707aa TRIDC2AG052840.15
- TRIDC2AG052840.2 2382 695aa TRIDC2AG052840.2
- TRIDC2AG052840.14 2464 533aa TRIDC2AG052840.14
- TRIDC2AG052840.3 2167 293aa TRIDC2AG052840.3
- TRIDC2AG052840.17 1503 423aa TRIDC2AG052840.17

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TRIDC2AG052840

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
TRIDC2AG052840

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression