RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	SEVIR_4G077200v2	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Zinc finger protein ZOP1
Status	Confidence	Length	3199 bases	Strand	Plus strand
Position	4 : 6133447 - 6136645	RNA binding domain	OCRE , zf-U1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
TKW20298	OCRE	PF17780	2.1e-16	1
TKW20298	zf-U1	PF06220	3.7e-08	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	TKW20298	1335	246aa	TKW20298

Gene Model

Click here to download SEVIR_4G077200v2's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download SEVIR_4G077200v2's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
SEVIR_4G077200v2

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
SEVIR_4G077200v2

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression