RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	SETIT_000316mg	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial
Status	Confidence	Length	2610 bases	Strand	Minus strand
Position	V : 19713541 - 19716150	RNA binding domain	PPR_3 , PPR
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
KQL05267	PPR_3	PF13812	4.8e-25	1
KQL05267	PPR	PF01535	2.6e-66	2
KQL05267	PPR	PF01535	2.6e-66	3
KQL05267	PPR	PF01535	2.6e-66	4
KQL05267	PPR	PF01535	2.6e-66	5
KQL05267	PPR	PF01535	2.6e-66	6
KQL05267	PPR	PF01535	2.6e-66	7
KQL05267	PPR	PF01535	2.6e-66	8
KQL05267	PPR	PF01535	2.6e-66	9
KQL05267	PPR	PF01535	2.6e-66	10
KQL05267	PPR	PF01535	2.6e-66	11
KQL05267	PPR	PF01535	2.6e-66	12

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	KQL05267	2610	825aa	KQL05267

Gene Model

Click here to download SETIT_000316mg's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download SETIT_000316mg's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
SETIT_000316mg

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
SETIT_000316mg

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression