RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	SELMODRAFT_404079	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	3303 bases	Strand	Minus strand
Position	GL377567 : 511341 - 514643	RNA binding domain	tRNA_synt_1c_R1 , tRNA-synt_1c , tRNA-synt_1c_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
EFJ36252	tRNA_synt_1c_R1	PF04558	7.8e-36	1
EFJ36252	tRNA-synt_1c	PF00749	7.1e-109	2
EFJ36252	tRNA-synt_1c_C	PF03950	4.1e-39	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	EFJ36252	2283	760aa	EFJ36252

Gene Model

Click here to download SELMODRAFT_404079's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download SELMODRAFT_404079's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
SELMODRAFT_404079

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
SELMODRAFT_404079

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression