RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	POPTR_001G368500v3	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein
Status	Confidence	Length	7716 bases	Strand	Minus strand
Position	1 : 38179930 - 38187645	RNA binding domain	Methyltr_RsmB-F , FtsJ
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
PNT58722	Methyltr_RsmB-F	PF01189	2.2e-51	1
PNT58722	FtsJ	PF01728	5.9e-05	2
PNT58723	Methyltr_RsmB-F	PF01189	2.8e-51	1
PNT58723	FtsJ	PF01728	7.3e-05	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID

Gene Model

Click here to download POPTR_001G368500v3's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download POPTR_001G368500v3's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
POPTR_001G368500v3

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
POPTR_001G368500v3

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression