RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	PHAVU_009G116900g	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein
Status	Confidence	Length	6097 bases	Strand	Minus strand
Position	9 : 17501462 - 17507558	RNA binding domain	tRNA-synt_2c , tRNA_SAD , DHHA1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ESW09307	tRNA-synt_2c	PF01411	2.3e-192	1
ESW09307	tRNA_SAD	PF07973	1.5e-18	2
ESW09307	DHHA1	PF02272	1e-20	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ESW09307	3380	977aa	ESW09307

Gene Model

Click here to download PHAVU_009G116900g's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download PHAVU_009G116900g's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
PHAVU_009G116900g

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
PHAVU_009G116900g

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression