RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	PHAVU_006G043400g	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein
Status	Confidence	Length	3288 bases	Strand	Minus strand
Position	6 : 15666930 - 15670217	RNA binding domain	Ribonuc_L-PSP
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ESW18467	Ribonuc_L-PSP	PF01042	8.4e-40	1
ESW18466	Ribonuc_L-PSP	PF01042	9.4e-20	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ESW18466	510	169aa	ESW18466
-	ESW18467	1025	187aa	ESW18467

Gene Model

Click here to download PHAVU_006G043400g's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download PHAVU_006G043400g's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
PHAVU_006G043400g

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
PHAVU_006G043400g

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression