RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	PHAVU_004G073900g	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein
Status	Confidence	Length	13322 bases	Strand	Minus strand
Position	4 : 11743352 - 11756673	RNA binding domain	DNA_pol_A_exo1 , PMC2NT , HRDC
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ESW23770	DNA_pol_A_exo1	PF01612	5.6e-40	1
ESW23770	PMC2NT	PF08066	9.9e-07	2
ESW23770	HRDC	PF00570	2.3e-09	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ESW23770	2982	880aa	ESW23770

Gene Model

Click here to download PHAVU_004G073900g's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download PHAVU_004G073900g's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
PHAVU_004G073900g

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
PHAVU_004G073900g

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression